PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007194
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 257aa    MW: 29041.4 Da    PI: 6.9792
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-45965PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH51.81.4e-16101146555
                HHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   5 hnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                hn  E+rRR+riN+++  L++l+P++      K +Ka++L +A+eY+k+Lq
  Lsa007194 101 HNLSEKRRRSRINEKLKALQTLVPNS-----NKTDKASMLDEAIEYLKQLQ 146
                9************************7.....5******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000835.71E-1790150No hitNo description
SuperFamilySSF474597.59E-2093156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.9E-2094156IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PROSITE profilePS5088817.99396145IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000104.4E-14101146IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003537.3E-18102151IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 257 aa     Download sequence    Send to blast
MADLYGTNND RSFSSSSSLE SEDMSSFLQT FLNNPSTKGK YEQLLPSPPS IPTDFLDSDN  60
RISDLSSFYS TEANQVQKQS EGRQNSNPPR SSKRTRAAEI HNLSEKRRRS RINEKLKALQ  120
TLVPNSNKTD KASMLDEAIE YLKQLQLKVQ TLTMRNGFGL PPIYSQEQEM QRGMIYNEGF  180
KLPNTSEVGI TFTQNQDFSI RREFDIPNHI GMPTLTNIMK PEIVFGSELA NENHYGFTNM  240
KEIGHNSGKM PSPGVSL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023762624.10.0transcription factor PIF3-like isoform X2
TrEMBLA0A2J6LGG81e-158A0A2J6LGG8_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G36930.12e-25bHLH family protein