PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007224
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 182aa    MW: 18994.6 Da    PI: 6.522
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58676690PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-47696PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH22.22.5e-076421455
               HHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH 14 driNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55
               +ri +++  L+el+P+a      K +Ka++L + ++Y+k Lq
  Lsa007224  6 ERIAERMKSLQELVPNA-----NKTDKASMLDEIIDYVKFLQ 42
               58999***********8.....6******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.776141IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003532.3E-7347IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.93E-8646No hitNo description
SuperFamilySSF474593.79E-11652IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.107.0E-12750IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.3E-4742IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 182 aa     Download sequence    Send to blast
MAVKAERIAE RMKSLQELVP NANKTDKASM LDEIIDYVKF LQLQVKVLSM SRLGGPAPLV  60
ADISTEGGRD ALEGGAAAGR SNNGTSSSNN DTMTVAENKV VKLMEEDMGS AMQYLQGKGL  120
CLMPISLATA ISTATCHPSS SRNNHQLLGG GPSSPNVSVL TAQSANGIMP PEVSPSKNPP  180
PS
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: By cold, UV, ethylene (ACC), flagellin, jasmonic acid (JA), and salicylic acid (SA) treatments. {ECO:0000269|PubMed:12679534}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023733802.11e-124transcription factor bHLH66-like
SwissprotQ9ZUG99e-64BH066_ARATH; Transcription factor bHLH66
TrEMBLA0A2J6KFP11e-123A0A2J6KFP1_LACSA; Uncharacterized protein
STRINGXP_009366166.12e-73(Pyrus x bretschneideri)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G24260.12e-62LJRHL1-like 1
Publications ? help Back to Top
  1. Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH
    Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature.
    Differentiation, 2010. 80(1): p. 1-8
    [PMID:20219281]
  2. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]
  3. Zhang J, et al.
    Sperm cells are passive cargo of the pollen tube in plant fertilization.
    Nat Plants, 2017. 3: p. 17079
    [PMID:28585562]