PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007259

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

SBP

Protein Properties

Length: 200aa MW: 22408 Da PI: 8.76

Description

SBP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S32125677	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-2577	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	SBP	125.7	1.9e-39	24	100	1	77
--SSTT-----TT--HHHHHTT--HHHHT-S-EEETTEEEEE-TTTSSEEETTT--SS--S-STTTT-------S-- CS SBP 1 lCqvegCeadlseakeyhrrhkvCevhskapvvlvsgleqrfCqqCsrfhelsefDeekrsCrrrLakhnerrrkkq 77 +C v+gC+adl ++++yh+rhkvCevhsk+p+v ++ ++ rfCqqCsrfh l+efDe+krsCr+rL++hn+rrrk++ Lsa007259 24 TCVVDGCTADLRNCRKYHQRHKVCEVHSKSPEVSIKTEKLRFCQQCSRFHPLDEFDEGKRSCRKRLDGHNRRRRKPR 100 5**************************************************************************86 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:4.10.1100.10	6.0E-31	19	86	IPR004333	Transcription factor, SBP-box
PROSITE profile	PS51141	30.154	22	99	IPR004333	Transcription factor, SBP-box
SuperFamily	SSF103612	9.81E-36	23	103	IPR004333	Transcription factor, SBP-box
Pfam	PF03110	2.3E-30	25	98	IPR004333	Transcription factor, SBP-box

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 200 aa Download sequence Send to blast
MALSTSGSSK RVCSEINNSV QAATCVVDGC TADLRNCRKY HQRHKVCEVH SKSPEVSIKT 60 EKLRFCQQCS RFHPLDEFDE GKRSCRKRLD GHNRRRRKPR PYLFPANHHG TGVVQPSGPP 120 VHTAMASMTT SSVWSHLDHA PSLLSSSEAS FSHVVHPPSG SFSATISLEN DSDAGWGGMI 180 DTTSNYNQDP QEFPFYWRYK

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ul4_A	3e-28	25	98	11	84	squamosa promoter binding protein-like 4
Search in ModeBase

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	81	98	KRSCRKRLDGHNRRRRKP
2	93	99	RRRRKPR

Functional Description ? help Back to Top
Source	Description
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.
UniProt	Trans-acting factor that binds specifically to the consensus nucleotide sequence 5'-TNCGTACAA-3'. {ECO:0000250}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Negatively regulated by microRNAs miR156 and miR157. {ECO:0000305\|PubMed:12202040}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023747241.1	1e-150	squamosa promoter-binding-like protein 13A
Refseq	XP_023747243.1	1e-150	squamosa promoter-binding-like protein 13A
Swissprot	B9DI20	9e-40	SP13A_ARATH; Squamosa promoter-binding-like protein 13A
Swissprot	P0DI11	9e-40	SP13B_ARATH; Squamosa promoter-binding-like protein 13B
TrEMBL	A0A2J6JLH7	1e-149	A0A2J6JLH7_LACSA; Uncharacterized protein
STRING	cassava4.1_009657m	3e-45	(Manihot esculenta)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G50670.1	1e-41	SBP family protein

Publications ? help Back to Top
Jorgensen SA,Preston JC Differential SPL gene expression patterns reveal candidate genes underlying flowering time and architectural differences in Mimulus and Arabidopsis. Mol. Phylogenet. Evol., 2014. 73: p. 129-39 [PMID:24508602] Xu M, et al. Developmental Functions of miR156-Regulated SQUAMOSA PROMOTER BINDING PROTEIN-LIKE (SPL) Genes in Arabidopsis thaliana. PLoS Genet., 2016. 12(8): p. e1006263 [PMID:27541584]