PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007326
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family CO-like
Protein Properties Length: 369aa    MW: 41182.5 Da    PI: 5.0786
Description CO-like family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58690274PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-24956PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-B_box18.63.8e-06435536
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg 36
               +C+ ++e +   +C+++  +lC +C  + H+ 
  Lsa007326  4 NCDYCGEARSMVYCRSDAAYLCLSCDRNVHSA 35
               6***************************9954 PP
2zf-B_box27.37.4e-094790541
   zf-B_box  5 kCpeHeekelqlfCedCqqllCedClleeHkg.......Htvvp 41
               +C++++++++   C d +  lC++C   +H+g       H++++
  Lsa007326 47 VCDTCNSQPAVVRCVDEKASLCQNCDWVGHNGanssastHSRQT 90
               8*****************************88888888888765 PP
3CCT56.11.3e-19312355144
        CCT   1 ReaallRYkeKrktRkFeKkirYesRKavAesRpRvKGrFvkqa 44 
                R  a+lRYkeK+k RkFeK++rY++RKa+A+ R+RvKGrF k+ 
  Lsa007326 312 RSDAVLRYKEKKKMRKFEKRVRYATRKARADVRKRVKGRFIKAG 355
                889*************************************9975 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000213.34E-6535No hitNo description
SMARTSM003362.0E-6547IPR000315B-box-type zinc finger
PROSITE profilePS501199.143547IPR000315B-box-type zinc finger
PROSITE profilePS501198.9444391IPR000315B-box-type zinc finger
PfamPF006432.7E-54689IPR000315B-box-type zinc finger
CDDcd000213.00E-64791No hitNo description
SMARTSM003360.34891IPR000315B-box-type zinc finger
PfamPF062035.2E-15312354IPR010402CCT domain
PROSITE profilePS5101715.041312354IPR010402CCT domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0005622Cellular Componentintracellular
GO:0005515Molecular Functionprotein binding
GO:0008270Molecular Functionzinc ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 369 aa     Download sequence    Send to blast
MGYNCDYCGE ARSMVYCRSD AAYLCLSCDR NVHSANPLSK RHMRTLVCDT CNSQPAVVRC  60
VDEKASLCQN CDWVGHNGAN SSASTHSRQT LNCYSGCPSA VELSSIWSFM ESCEEDMESM  120
SIADNSQEHS ENKTQDSSLP DENKSDWMGS FNIEVDNKSQ DIFHQVKPLN SSQSKVSYSR  180
TKDSEQVVDD GLYDDFTMDE VDMNIENYEE LFGVGHNDPK HLFAKDGIDS LFGMRDSTKE  240
PECSQAASVD SLMSCKTEPN ACYAKQHSNL SFSSLTGGDS SGGEYQDCGA SSVVPMGEPP  300
WCTPGPGSTT IRSDAVLRYK EKKKMRKFEK RVRYATRKAR ADVRKRVKGR FIKAGEAYDY  360
DPMTETRSF
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770056.10.0zinc finger protein CONSTANS-LIKE 9-like
SwissprotQ9LUA91e-129COL10_ARATH; Zinc finger protein CONSTANS-LIKE 10
TrEMBLA0A2J6L0060.0A0A2J6L006_LACSA; Uncharacterized protein
STRINGXP_009768363.11e-150(Nicotiana sylvestris)
Publications ? help Back to Top
  1. Ding Y, et al.
    Four distinct types of dehydration stress memory genes in Arabidopsis thaliana.
    BMC Plant Biol., 2013. 13: p. 229
    [PMID:24377444]