PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007390

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

bHLH

Protein Properties

Length: 404aa MW: 45332.8 Da PI: 6.7092

Description

bHLH family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-33862	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HLH	40.1	6.5e-13	333	378	6	55
HHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS HLH 6 nerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 +++Er RR ri +++ +L+el P +k + a++L +AveYIk+Lq Lsa007390 333 SIAERMRRTRISERIKRLQELFPDM----DKQTNTADMLDMAVEYIKDLQ 378 689*******************7....688***************9 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50888	14.322	327	377	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamily	SSF47459	1.06E-14	329	393	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
CDD	cd00083	1.77E-11	331	382	No hit	No description
Gene3D	G3DSA:4.10.280.10	1.4E-14	332	398	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
Pfam	PF00010	5.1E-10	333	378	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain
SMART	SM00353	1.1E-11	333	383	IPR011598	Myc-type, basic helix-loop-helix (bHLH) domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046983	Molecular Function	protein dimerization activity

Sequence ? help Back to Top
Protein Sequence Length: 404 aa Download sequence Send to blast
MYGVNGTSSD AISRDMNSLL HSSTFKHPAD GEFAKIKQLI SLDPYPDYDQ QTQSQNQQDE 60 NQSSLLRYRS SPSSFFSNLL NENGDEEFPD PVTAASNHEP EERFFKQQKK SEYDSREFLD 120 FLDYASPSST PMKQERRETS IQNQDLPHPS STAVMHGSTS RRLPDSGSYD YTNQSNLDCA 180 STFRATDSTS PNLIRQNSTP AGFLSSLNVE NGFTGVKDVR KGSSSSTSNN HISFSLGPSS 240 SSRFLPQIAE NENELHDSTF NGLKRSRDGG LKISHSQNGE SGNHTPSLLH HMSLPKTSSE 300 MAAAAENFLH FQQESSVPWK TRAKRGFATH PRSIAERMRR TRISERIKRL QELFPDMDKQ 360 TNTADMLDMA VEYIKDLQKE LQILNDARAR CKCSSKQLQS GSTM

Sequence ? help Back to Top

Protein Sequence Length: 404 aa Download sequence Send to blast

MYGVNGTSSD AISRDMNSLL HSSTFKHPAD GEFAKIKQLI SLDPYPDYDQ QTQSQNQQDE  60
NQSSLLRYRS SPSSFFSNLL NENGDEEFPD PVTAASNHEP EERFFKQQKK SEYDSREFLD  120
FLDYASPSST PMKQERRETS IQNQDLPHPS STAVMHGSTS RRLPDSGSYD YTNQSNLDCA  180
STFRATDSTS PNLIRQNSTP AGFLSSLNVE NGFTGVKDVR KGSSSSTSNN HISFSLGPSS  240
SSRFLPQIAE NENELHDSTF NGLKRSRDGG LKISHSQNGE SGNHTPSLLH HMSLPKTSSE  300
MAAAAENFLH FQQESSVPWK TRAKRGFATH PRSIAERMRR TRISERIKRL QELFPDMDKQ  360
TNTADMLDMA VEYIKDLQKE LQILNDARAR CKCSSKQLQS GSTM

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738764.1	0.0	transcription factor bHLH130-like
Swissprot	Q66GR3	5e-52	BH130_ARATH; Transcription factor bHLH130
TrEMBL	A0A2J6K498	0.0	A0A2J6K498_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT2G42280.1	9e-51	bHLH family protein

Publications ? help Back to Top
Skinner MK,Rawls A,Wilson-Rawls J,Roalson EH Basic helix-loop-helix transcription factor gene family phylogenetics and nomenclature. Differentiation, 2010. 80(1): p. 1-8 [PMID:20219281]