PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007401
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 218aa    MW: 25166.6 Da    PI: 10.7848
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58672443PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding52.89.4e-171360148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+W+ eEd  l+++++++G g W++I+ + g++R++k+c++rw++yl
        Lsa007401 13 KGAWSVEEDISLKNYIEKHGEGKWHLIPLKAGLNRCRKSCRLRWLNYL 60
                     79********************************************97 PP
2Myb_DNA-binding44.34.1e-1466110147
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                      rg + ++E +l+++++k+lG++ W++Ia +++ gRt++++k++w+++
        Lsa007401  66 RGDFAKDEVDLILRLHKLLGNR-WALIAGRIP-GRTANDVKNYWNTH 110
                      6788899***************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5129422.458864IPR017930Myb domain
SuperFamilySSF466891.41E-2712107IPR009057Homeodomain-like
SMARTSM007172.0E-131262IPR001005SANT/Myb domain
PfamPF002492.5E-151360IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.5E-211467IPR009057Homeodomain-like
CDDcd001671.87E-101560No hitNo description
PROSITE profilePS5129415.89265115IPR017930Myb domain
SMARTSM007171.9E-1365113IPR001005SANT/Myb domain
PfamPF002495.1E-1366110IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.606.3E-2168112IPR009057Homeodomain-like
CDDcd001678.36E-1071110No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 218 aa     Download sequence    Send to blast
MRPCTNTGLM LRKGAWSVEE DISLKNYIEK HGEGKWHLIP LKAGLNRCRK SCRLRWLNYL  60
RPNIKRGDFA KDEVDLILRL HKLLGNRWAL IAGRIPGRTA NDVKNYWNTH HRSRPRQRRK  120
KKPIEDESLQ KTMVTIIKPQ PRTFSRTLNM GNNPRHTAMA HEVGNLNSPN NVTNNKFNAS  180
SGLKLPSNLL DDNISKYIDQ LLDDHETKFD GNFGCSSX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-21111095102B-MYB
Search in ModeBase
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1117122RRKKKP
Functional Description ? help Back to Top
Source Description
UniProtTranscription activator, when associated with BHLH002/EGL3/MYC146, BHLH012/MYC1, or BHLH042/TT8. {ECO:0000269|PubMed:15361138}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023769275.11e-160transcription factor MYB90-like
SwissprotQ9FNV92e-57MY113_ARATH; Transcription factor MYB113
TrEMBLA0A2J6L1M71e-159A0A2J6L1M7_LACSA; Uncharacterized protein
STRINGEOY039649e-63(Theobroma cacao)
STRINGXP_009605381.15e-63(Nicotiana tomentosiformis)
STRINGXP_009627993.15e-63(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G66370.12e-58myb domain protein 113
Publications ? help Back to Top
  1. Li T, et al.
    Jasmonic acid enhancement of anthocyanin accumulation is dependent on phytochrome A signaling pathway under far-red light in Arabidopsis.
    Biochem. Biophys. Res. Commun., 2014. 454(1): p. 78-83
    [PMID:25450360]
  2. Mondal SK,Roy S
    Genome-wide sequential, evolutionary, organizational and expression analyses of phenylpropanoid biosynthesis associated MYB domain transcription factors in Arabidopsis.
    J. Biomol. Struct. Dyn., 2018. 36(6): p. 1577-1601
    [PMID:28490275]