PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007426

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

TCP

Protein Properties

Length: 126aa MW: 14098 Da PI: 10.4732

Description

TCP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58693065	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	TCP	80.1	5.8e-25	25	86	4	65
TCP 4 kkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt 65 + r++ +hTkv+gR+ RvR++a+caar+F+L++eLG+ +d++tieWLl p+ + Lsa007426 25 AAARKKNRHTKVNGRGLRVRVPALCAARIFQLTRELGHRSDGQTIEWLLHHVDPSLFPTSSR 86 56799*********************************************999987665555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF03634	1.6E-20	28	108	IPR005333	Transcription factor, TCP
PROSITE profile	PS51369	18.91	29	83	IPR017887	Transcription factor TCP subgroup

Sequence ? help Back to Top
Protein Sequence Length: 126 aa Download sequence Send to blast
MDHLPPSTNN PLQLGPPNPT PTTSAAARKK NRHTKVNGRG LRVRVPALCA ARIFQLTREL 60 GHRSDGQTIE WLLHHVDPSL FPTSSRDSAV APENQRSSEL DLFPNLSFTS LLMQVEEDEI 120 KTKRKI

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023753131.1	9e-89	transcription factor TCP9-like
Swissprot	O64647	2e-22	TCP9_ARATH; Transcription factor TCP9
TrEMBL	A0A2J6M274	2e-87	A0A2J6M274_LACSA; Uncharacterized protein
STRING	VIT_08s0040g01600.t01	4e-25	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G72010.1	1e-24	TCP family protein