PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007455

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Protein Properties

Length: 263aa MW: 30077.4 Da PI: 8.1589

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-27442	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.9	1.6e-17	154	255	1	99
EEEE-..-HHHHT.T-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTE..EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 1 ffkvltpsdvlks.grlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgr..yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 f+kvlt sd+ + gr+v+pk++ae++ + + ++++++ + d ++++We+ ++y+ + g+ yvl+ G ++F + +L++gD+v F++++ ++++ ++ Lsa007455 154 FEKVLTASDADMKlGRIVIPKRYAEAFfpEVSAPKGIMMNILDMESKEWEFSFRYWPNCGSktYVLE-GLRDFMFSRKLQAGDTVSFYRVE-PGGKMAIG 251 89****987655**********977778999**************999888878888.******************766.89989999 PP EE-S CS B3 96 vfrk 99 ++++ Lsa007455 252 FRKT 255 8876 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	6.8E-27	151	259	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.53E-22	151	255	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	5.11E-22	152	254	No hit	No description
SMART	SM01019	3.7E-16	154	256	IPR003340	B3 DNA binding domain
Pfam	PF02362	2.0E-14	154	254	IPR003340	B3 DNA binding domain
PROSITE profile	PS50863	10.63	155	256	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 263 aa Download sequence Send to blast
MASSSSKASC FQCQDSTSNC FRDGWRLRNG ERAHLCYQCA CVYEEGRFCE TFHSNDDGWR 60 DCESCGKLVH CGCVVSFNQY FLLDFGGVIC RECSKKNLKL ARNQRYAREF QTDPTDVPDL 120 AKRIQIEPHY WPDGIVSDIK CISKTAKPFL NPLFEKVLTA SDADMKLGRI VIPKRYAEAF 180 FPEVSAPKGI MMNILDMESK EWEFSFRYWP NCGSKTYVLE GLRDFMFSRK LQAGDTVSFY 240 RVEPGGKMAI GFRKTSVAKP AHQ

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
6j9a_A	8e-35	138	258	8	127	B3 domain-containing transcription repressor VAL1
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730389.1	0.0	B3 domain-containing protein Os07g0563300-like isoform X1
Swissprot	Q6Z3U3	6e-38	Y7797_ORYSJ; B3 domain-containing protein Os07g0679700
TrEMBL	A0A2J6KN53	0.0	A0A2J6KN53_LACSA; Uncharacterized protein
STRING	Migut.H01903.1.p	2e-90	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G32010.1	3e-37	HSI2-like 1

Publications ? help Back to Top
Kikuchi S, et al. Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice. Science, 2003. 301(5631): p. 376-9 [PMID:12869764]