PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007542

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 468aa MW: 53417.4 Da PI: 4.7721

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58687516	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-32211	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	10.7	0.0016	159	170	1	12
EEETTTTEEESS CS zf-C2H2 1 ykCpdCgksFsr 12 y+Cp+Cgk+++ Lsa007542 159 YVCPKCGKRYNA 170 9********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51344	30.349	6	136	IPR017919	Transcription factor TFE/TFIIEalpha HTH domain
SMART	SM00531	1.1E-56	40	208	IPR002853	Transcription initiation factor IIE subunit alpha, N-terminal
SuperFamily	SSF46785	7.96E-6	42	96	IPR011991	Winged helix-turn-helix DNA-binding domain
Pfam	PF02002	5.5E-9	42	153	IPR024550	TFIIEalpha/SarR/Rpc3 HTH domain
Gene3D	G3DSA:1.10.10.10	2.4E-4	43	99	IPR011991	Winged helix-turn-helix DNA-binding domain
Gene3D	G3DSA:3.30.40.10	1.5E-18	145	204	IPR013083	Zinc finger, RING/FYVE/PHD-type
SuperFamily	SSF57783	3.06E-8	146	199	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006367	Biological Process	transcription initiation from RNA polymerase II promoter
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 468 aa Download sequence Send to blast
MIIEPFNKLV KLVARAFYDD ITAKGDNQHQ PKSGRSDNRG IAVVVLDALT RRQWVHEEDL 60 AKDLKLHLKQ LRRTLQFFEE EKLVSRVHMK ETAKGAKAYS AAAADSHPGR EGDEKVKYHT 120 HSYCCLDYAQ IHDVVRYRLH RMKKKLKDEL DNKNTVQEYV CPKCGKRYNA LDAIQLICFE 180 DDSFHCEICN TELVAESDKL ASEQDLGDGD DNARRRRREK LRDLLQKLEM ELTPLIDQLG 240 RLKDLEAPDY GTLETWKARA RAVARASNAN EYDPTTNGHG QGGTRMPFLG ETKVEVAFCG 300 EEEKGEIKCE DEDEAMKVLP PWMIKQGMNL TNEQRGGVNQ QESKMEGGTS SAAAAIDFKD 360 DNKLTSQQDD VKNLQDEYFK AYYAALLERQ KEHEQGMKKE QYLSKNNNNS ADVEALNSRK 420 RQRDDDVEGD VEWEETPTAD ETFKVDLNVE ATEPSGDDDD DGIDWEEG

Sequence ? help Back to Top

Protein Sequence Length: 468 aa Download sequence Send to blast

MIIEPFNKLV KLVARAFYDD ITAKGDNQHQ PKSGRSDNRG IAVVVLDALT RRQWVHEEDL  60
AKDLKLHLKQ LRRTLQFFEE EKLVSRVHMK ETAKGAKAYS AAAADSHPGR EGDEKVKYHT  120
HSYCCLDYAQ IHDVVRYRLH RMKKKLKDEL DNKNTVQEYV CPKCGKRYNA LDAIQLICFE  180
DDSFHCEICN TELVAESDKL ASEQDLGDGD DNARRRRREK LRDLLQKLEM ELTPLIDQLG  240
RLKDLEAPDY GTLETWKARA RAVARASNAN EYDPTTNGHG QGGTRMPFLG ETKVEVAFCG  300
EEEKGEIKCE DEDEAMKVLP PWMIKQGMNL TNEQRGGVNQ QESKMEGGTS SAAAAIDFKD  360
DNKLTSQQDD VKNLQDEYFK AYYAALLERQ KEHEQGMKKE QYLSKNNNNS ADVEALNSRK  420
RQRDDDVEGD VEWEETPTAD ETFKVDLNVE ATEPSGDDDD DGIDWEEG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
5fyw_W	5e-16	9	244	12	191	TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5fz5_W	5e-16	9	244	12	191	TRANSCRIPTION INITIATION FACTOR IIE SUBUNIT ALPHA
5oqm_W	6e-16	9	244	12	191	Transcription factor TFIIE subunit
5sva_h	5e-16	9	244	12	191	Transcription initiation factor IIE subunit alpha
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Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	214	219	RRRREK

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023738954.1	0.0	transcription initiation factor IIE subunit alpha-like isoform X1
TrEMBL	A0A2J6K440	0.0	A0A2J6K440_LACSA; Uncharacterized protein
STRING	Gorai.007G172700.1	0.0	(Gossypium raimondii)