PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007573
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 174aa    MW: 19379.3 Da    PI: 9.0627
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58674460PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H210.90.00154466123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C++ F++   L  H  +H
  Lsa007573 44 FECKTCNRQFPSFQALGGHRASH 66
               89**********99999998887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.61E-842112No hitNo description
PfamPF139122.8E-134368IPR007087Zinc finger, C2H2
PROSITE profilePS501579.8274471IPR007087Zinc finger, C2H2
SMARTSM003550.164466IPR015880Zinc finger, C2H2-like
PROSITE patternPS0002804666IPR007087Zinc finger, C2H2
PfamPF139121.2E-989114IPR007087Zinc finger, C2H2
SMARTSM003550.2590112IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.26590117IPR007087Zinc finger, C2H2
PROSITE patternPS00028092112IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 174 aa     Download sequence    Send to blast
MVCLPMKRSR DQDALTSMAN YLMILSRGTT STESYDVNTV NRVFECKTCN RQFPSFQALG  60
GHRASHKKPR LDGDMTGHHD AIVLGKPKAH KCSICGLEFA IGQALGGHMR RHRAATTTEN  120
HSPLPLDLSP APMVKKVNLR RVFSLDLNLT PLENDSGFRV DDEKVTPITV DFFL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763743.11e-128zinc finger protein ZAT12-like
TrEMBLA0A2J6LDX51e-123A0A2J6LDX5_LACSA; Uncharacterized protein
STRINGXP_009762518.13e-60(Nicotiana sylvestris)