PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007589
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C3H
Protein Properties Length: 219aa    MW: 24725.8 Da    PI: 8.8348
Description C3H family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58672179PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-CCCH34.63.3e-113963126
               --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH  1 yktelCrffartGtCkyGdrCkFaHg 26
               ykt++C+ f++ G C+ Gd+C+FaHg
  Lsa007589 39 YKTRICQKFLE-GNCRNGDSCTFAHG 63
               9**********.*************8 PP
2zf-CCCH31.23.8e-1096118325
                S---SGGGGTS--TTTTT-SS-S CS
    zf-CCCH   3 telCrffartGtCkyGdrCkFaH 25 
                +++C+ f  tG+C+yG++C+F H
  Lsa007589  96 MRICHKFVNTGECPYGEKCNFLH 118
                689******************** PP
3zf-CCCH40.74e-13179204126
                --S---SGGGGTS--TTTTT-SS-SS CS
    zf-CCCH   1 yktelCrffartGtCkyGdrCkFaHg 26 
                +kt++C+ +  tG+C +Gd+C+FaHg
  Lsa007589 179 WKTRICSKWETTGQCVFGDKCHFAHG 204
                8************************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:4.10.1000.101.1E-153471IPR000571Zinc finger, CCCH-type
SuperFamilySSF902294.97E-93569IPR000571Zinc finger, CCCH-type
SMARTSM003567.1E-73864IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010316.6333865IPR000571Zinc finger, CCCH-type
PfamPF006428.9E-93963IPR000571Zinc finger, CCCH-type
SuperFamilySSF902293.14E-792120IPR000571Zinc finger, CCCH-type
SMARTSM003560.001293120IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.106.5E-995119IPR000571Zinc finger, CCCH-type
PfamPF006428.0E-896118IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010313.94898121IPR000571Zinc finger, CCCH-type
Gene3DG3DSA:4.10.1000.102.7E-16174210IPR000571Zinc finger, CCCH-type
SuperFamilySSF902292.35E-10176210IPR000571Zinc finger, CCCH-type
SMARTSM003562.3E-7178205IPR000571Zinc finger, CCCH-type
PROSITE profilePS5010314.709178206IPR000571Zinc finger, CCCH-type
PfamPF006421.2E-9179204IPR000571Zinc finger, CCCH-type
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 219 aa     Download sequence    Send to blast
MLQHPVLGGN NGGGEVNTNP QKSTPLLPPI NRGTTHIFYK TRICQKFLEG NCRNGDSCTF  60
AHGSKDLREP PPNWPDLVKD NRGQNWNDDQ RIIHQMRICH KFVNTGECPY GEKCNFLHES  120
PSKFKAQTER TRDSSVIKIQ TMVDRGQPNG SQQRLHNNIN NMNPIKVTTL SSDPNATFWK  180
TRICSKWETT GQCVFGDKCH FAHGLSELNT PVARVEVQG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023757634.11e-165zinc finger CCCH domain-containing protein 39-like
TrEMBLA0A2J6LRX61e-163A0A2J6LRX6_LACSA; Uncharacterized protein
STRINGSolyc11g070070.1.13e-72(Solanum lycopersicum)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G19360.11e-57C3H family protein