PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007656
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HSF
Protein Properties Length: 351aa    MW: 39878.4 Da    PI: 6.6604
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58687765PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-11729PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind103.32.1e-321849101
                   HHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXXXXX CS
  HSF_DNA-bind   9 iledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekikrkk 101
                   +++d+ +++++sws++g+sfvv+++ efa+++LpkyFkh+nf+SFvRQLn+YgF+k++ ++         weF++++F +g+++ll+ki+r+k
     Lsa007656   1 MVDDPLTDHIVSWSHTGSSFVVWNPPEFASELLPKYFKHNNFSSFVRQLNTYGFRKIDPDQ---------WEFANDEFLRGQRHLLKKIHRRK 84 
                   899*******************************************************999.........*********************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM004159.4E-49183IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004475.7E-29183IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene3DG3DSA:1.10.10.101.3E-34183IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF467857.35E-31183IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000561.8E-103244IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043403357IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000561.8E-104557IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 351 aa     Download sequence    Send to blast
MVDDPLTDHI VSWSHTGSSF VVWNPPEFAS ELLPKYFKHN NFSSFVRQLN TYGFRKIDPD  60
QWEFANDEFL RGQRHLLKKI HRRKPIHSHS TPPQGSTPAT LSPSERQEYE DDIQKLKHET  120
NSLRLVLQRH KQENQEYEQN FATLRERVQK IQLRHKKTMS FLAQILEKPG FLESNTRKRR  180
LLITTYLHGE ANADDNGNPD SIPLLNKLES SLKFWTDFVN DIVKVSGEET YDFGILAQPE  240
KQVSGDFNEV SRVKSSGIDV NAAPAAATDG DGGAATVPAV QAGANDVFWE QFLTETPGGG  300
DTQEVQSARR DVINKHDELG QRKSLWNTNN NLDKITEKMG NLSPSGKLDV R
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B2e-2218336129Heat shock factor protein 1
5d5v_B2e-2218336129Heat shock factor protein 1
5d5v_D2e-2218336129Heat shock factor protein 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766107.10.0heat stress transcription factor A-4c-like
TrEMBLA0A2J6L8V50.0A0A2J6L8V5_LACSA; Uncharacterized protein
STRINGVIT_12s0028g01410.t011e-112(Vitis vinifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G45710.12e-77HSF family protein