PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007688
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NAC
Protein Properties Length: 596aa    MW: 66769 Da    PI: 5.1852
Description NAC family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58693982PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-25436PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NAM154.54.6e-4871361128
        NAM   1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLp..kkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kg 97 
                lp+G+rF+Ptdeel+++yL+ k++g + ++ ++i+e+d++k ePwdLp  + +++ ++ew+fF+++d+ky++g+r nrat +gyWkatgkd++++++ ++
  Lsa007688   7 LPVGYRFRPTDEELINHYLRLKINGYDDDV-TCIREIDVCKKEPWDLPdlSVIESIDNEWFFFCPKDRKYQNGQRLNRATIAGYWKATGKDRTIKTSrGS 105
                799************************999.89**************96447788899************************************998678 PP

        NAM  98 elvglkktLvfykgrapkgektdWvmheyrl 128
                +++g kktLvfy grapkge+t+Wv+hey +
  Lsa007688 106 RVIGKKKTLVFYLGRAPKGERTHWVIHEYCA 136
                88***************************75 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019415.49E-554159IPR003441NAC domain
PROSITE profilePS5100554.3637159IPR003441NAC domain
PfamPF023652.3E-248135IPR003441NAC domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 596 aa     Download sequence    Send to blast
MDVLPALPVG YRFRPTDEEL INHYLRLKIN GYDDDVTCIR EIDVCKKEPW DLPDLSVIES  60
IDNEWFFFCP KDRKYQNGQR LNRATIAGYW KATGKDRTIK TSRGSRVIGK KKTLVFYLGR  120
APKGERTHWV IHEYCATEKE LDGTHSGQSP FVLCRLFRKH DGKDDDPGSP KFIDVDQNTA  180
SSPSLVKSST EDPPSDPVTP MLTGQIGDTD EANVDPLGYL DLQGLCDPIP EHLDSKIFSP  240
LHSQMHVEFG SSYLGNPSID NPMQYQYGTN AKDIMEFLDN VLVEPDRFPL EDTSYKDACP  300
AQASMETARF KEPESIGELK GKMGHDANGN GPYVQDSRTP CHMGHELQGN YPDENIIWFS  360
PVEDQVKSFV KEEHELCSNN GNSLASGNDV NSGTGIIIRN WKKAKLPGIP FQGTANRRLR  420
VNMKLCVRPS YNQEQPTNMC FNEEQSIKDK VDDYKEAMEE DHVAYDDENS SGTGIVIRTR  480
ENPIPSSSIP FQGTASRRIR LQKKLQLGFI RKPMKLDTSE EESSVTEAKE PAEISTDEKS  540
VDQDSGSNVI QAKESSFYSK AKTSLASIPV LYMPKVLVVM GLCAGGVALW KCLRGG
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1ut4_A6e-42616016166NO APICAL MERISTEM PROTEIN
1ut4_B6e-42616016166NO APICAL MERISTEM PROTEIN
1ut7_A6e-42616016166NO APICAL MERISTEM PROTEIN
1ut7_B6e-42616016166NO APICAL MERISTEM PROTEIN
4dul_A6e-42616016166NAC domain-containing protein 19
4dul_B6e-42616016166NAC domain-containing protein 19
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023754934.10.0protein NTM1-like 9
TrEMBLA0A2J6LY690.0A0A2J6LY69_LACSA; Uncharacterized protein
STRINGXP_009608176.11e-114(Nicotiana tomentosiformis)