PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007709
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 275aa    MW: 30941.2 Da    PI: 9.1429
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S29958561PU_unrefUnigeneView CDS
gnl|UG|Lsa#S58684726PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-9109PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH39.11.4e-1285131354
                HHHHHHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH   3 rahnerErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                r+h+e+ErrRR+riN  ++ Lr+l+P       +K++Ka+ L +++ +++++
  Lsa007709  85 RNHSEAERRRRERINGHLSMLRSLIPGT-----TKMDKASLLAEVISHLNQM 131
                58*************************9.....8**************9997 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.83482131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000102.6E-1085131IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474591.44E-1385136IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.8E-1385133IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000838.05E-485133No hitNo description
SMARTSM003531.3E-1288137IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd048731.97E-4172238No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 275 aa     Download sequence    Send to blast
MEFPPSFFKG FTSSEEYALK EMMMMRGGCG RTTSSSSLVL DNERGEIVRA LVRPGSIHHH  60
HHHHNSHVHH HQKGAKAEKA LMALRNHSEA ERRRRERING HLSMLRSLIP GTTKMDKASL  120
LAEVISHLNQ MRKTATESTK GVLIPMDIDE VKVEQQDDTI GLNGSSYSIK ASLCCEYKHE  180
VLSDLKEAID GLHLKTIRAE IATLGSRMIN LFVITGSKDD VNIKDVVSSV RQALKSVLDK  240
FYASQEFSEN NALSNKRRRV SFFTPENSSS LGDFW
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
19095ERRRRE
2255259KRRRV
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737512.10.0transcription factor bHLH30-like
TrEMBLA0A2J6K7A90.0A0A2J6K7A9_LACSA; Uncharacterized protein
STRINGXP_009786357.18e-93(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G68810.11e-32bHLH family protein