PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007726
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family RAV
Protein Properties Length: 354aa    MW: 39555.7 Da    PI: 9.1595
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-27761PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP233.98.1e-1162110155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s++kGV   + + rW A+I++      ++r++lg+f  ++eAa a++ a ++++g
  Lsa007726  62 SRFKGVVPQP-NSRWGAQIYEK-----HQRVWLGTFNEEDEAAMAYDVAVQRFRG 110
                6899998777.89********3.....5**********99************998 PP
2B3100.41.1e-31189288196
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k+ tpsdv+k++rlv+pk++ae+h     g++ +++ l +ed ++++W+++++y+++s++yvltkGW++Fvk+++L++gD+v F+++   e++l++ +
  Lsa007726 189 FQKTVTPSDVGKLNRLVIPKQHAEKHfpvqRGSTSKGVLLHFEDNDSKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLNAGDSVSFQRSTGPEKQLYIDW 288
                99****************************778889***************************************************8766777677766 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
CDDcd000187.68E-2262116No hitNo description
SuperFamilySSF541716.21E-1562118IPR016177DNA-binding domain
PfamPF008471.5E-662110IPR001471AP2/ERF domain
PROSITE profilePS5103218.01763118IPR001471AP2/ERF domain
SMARTSM003806.1E-2563124IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.105.2E-1763117IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.2E-40181290IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019361.16E-29185288IPR015300DNA-binding pseudobarrel domain
CDDcd100173.95E-27187277No hitNo description
SMARTSM010192.1E-25189292IPR003340B3 DNA binding domain
PROSITE profilePS5086313.535189292IPR003340B3 DNA binding domain
PfamPF023621.6E-28189288IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 354 aa     Download sequence    Send to blast
MDTSCTDDQS TTTETISTVA PTVVTPRQPP VETSLCRVGS GASVVLDPEG GVEAQSRKLP  60
SSRFKGVVPQ PNSRWGAQIY EKHQRVWLGT FNEEDEAAMA YDVAVQRFRG RDAVTNLKPL  120
EADTKEASLE ASFLSRHSKA EIVDMLRKHT YNDELEQSKR NCSIVKPISG AGLSCSSGSG  180
SVIPREHLFQ KTVTPSDVGK LNRLVIPKQH AEKHFPVQRG STSKGVLLHF EDNDSKVWRF  240
RYSYWNSSQS YVLTKGWSRF VKEKNLNAGD SVSFQRSTGP EKQLYIDWKA KTGLDNTNTQ  300
PIQPVKLVKP VQMLRLFGVN IPSIINCNGK RSHDTEMDLL GFEDCKKQRL IDAL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A1e-5318630111127DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746260.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-136RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2J6JND60.0A0A2J6JND6_LACSA; Uncharacterized protein
STRINGcassava4.1_010157m1e-161(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-133related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]