PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa007794

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

SRS

Protein Properties

Length: 387aa MW: 40139.3 Da PI: 8.5613

Description

SRS family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58690146	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	DUF702	214.2	3e-66	181	339	4	152
DUF702 4 gtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalsstklssaeskkelets 103 t +CqdCGnqakkdC+h+RCRtCCksrgfdCathvkstWvpaa+rrerq + +++ + a +sa+++ +k++r + +++++ s+t++s+++++++++ts Lsa007794 181 STLTCQDCGNQAKKDCNHRRCRTCCKSRGFDCATHVKSTWVPAARRRERQLMPSTSGAAAGSSASTSVTKKPRLT--SRTTTPSHTSTSNTTPPRSFDTS 278 5679*******************************************99999998999898999999999975..99999*************9 PP DUF702 104 s............lPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGl 152 s lP +v+++avf+cvrv++v+dg++e+aYq+ v+igGh+fkG+LydqG+ Lsa007794 279 SshhhqdpsfmqsLPVQVRAPAVFKCVRVTAVEDGDDEYAYQACVTIGGHLFKGFLYDQGA 339 99********************************************************7 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Pfam	PF05142	4.1E-60	182	339	IPR007818	Protein of unknown function DUF702
TIGRFAMs	TIGR01623	7.4E-27	184	226	IPR006510	Zinc finger, lateral root primordium type 1
TIGRFAMs	TIGR01624	1.2E-27	292	338	IPR006511	Lateral Root Primordium type 1, C-terminal

Sequence ? help Back to Top
Protein Sequence Length: 387 aa Download sequence Send to blast
VVASSRNTRL PSDSGAFADW VANPSSSSAL RPSDQDLSLG FNACSAAPGG GSTGIWSSAS 60 ARQINYGVPA EMGMFVVAPS SHHLSDHAHA HSLNAPFSNA STATATALGV GVIPLITATP 120 CLDEGMVGNR GIRGNNANTT SNSIQLWQSH PQQSYFKKSL VSDHGFCGGG SGVGSASTSG 180 STLTCQDCGN QAKKDCNHRR CRTCCKSRGF DCATHVKSTW VPAARRRERQ LMPSTSGAAA 240 GSSASTSVTK KPRLTSRTTT PSHTSTSNTT PPRSFDTSSS HHHQDPSFMQ SLPVQVRAPA 300 VFKCVRVTAV EDGDDEYAYQ ACVTIGGHLF KGFLYDQGAG TRDNSNIPNL SELHLGGGVG 360 RNVGGSLSSQ PLEPPPVYGS SGGGLLG

Sequence ? help Back to Top

Protein Sequence Length: 387 aa Download sequence Send to blast

VVASSRNTRL PSDSGAFADW VANPSSSSAL RPSDQDLSLG FNACSAAPGG GSTGIWSSAS  60
ARQINYGVPA EMGMFVVAPS SHHLSDHAHA HSLNAPFSNA STATATALGV GVIPLITATP  120
CLDEGMVGNR GIRGNNANTT SNSIQLWQSH PQQSYFKKSL VSDHGFCGGG SGVGSASTSG  180
STLTCQDCGN QAKKDCNHRR CRTCCKSRGF DCATHVKSTW VPAARRRERQ LMPSTSGAAA  240
GSSASTSVTK KPRLTSRTTT PSHTSTSNTT PPRSFDTSSS HHHQDPSFMQ SLPVQVRAPA  300
VFKCVRVTAV EDGDDEYAYQ ACVTIGGHLF KGFLYDQGAG TRDNSNIPNL SELHLGGGVG  360
RNVGGSLSSQ PLEPPPVYGS SGGGLLG

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds DNA on 5'-ACTCTAC-3' and promotes auxin homeostasis-regulating gene expression (e.g. YUC genes), as well as genes affecting stamen development, cell expansion and timing of flowering. Synergistically with other SHI-related proteins, regulates gynoecium, stamen and leaf development in a dose-dependent manner, controlling apical-basal patterning. Promotes style and stigma formation, and influence vascular development during gynoecium development. May also have a role in the formation and/or maintenance of the shoot apical meristem (SAM). Modulates root growth. {ECO:0000269\|PubMed:16740146, ECO:0000269\|PubMed:18835563}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Expression repressed by LDL1 via histone H3 and H4 deacetylation. {ECO:0000269\|PubMed:18835563}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023735328.1	0.0	protein LATERAL ROOT PRIMORDIUM 1-like
Swissprot	Q94CK9	4e-73	LRP1_ARATH; Protein LATERAL ROOT PRIMORDIUM 1
TrEMBL	A0A2J6KC48	0.0	A0A2J6KC48_LACSA; Uncharacterized protein
STRING	XP_009604000.1	1e-110	(Nicotiana tomentosiformis)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G12330.4	7e-72	Lateral root primordium (LRP) protein-related

Publications ? help Back to Top
Estornell LH,Landberg K,Cierlik I,Sundberg E SHI/STY Genes Affect Pre- and Post-meiotic Anther Processes in Auxin Sensing Domains in Arabidopsis. Front Plant Sci, 2018. 9: p. 150 [PMID:29491878]