PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa007987
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 249aa    MW: 27951.4 Da    PI: 4.9916
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58679728PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH33.76.5e-111822221055
                HHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH  10 rrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                r+RR++iN+++  L+ l+P+      +K++ +++Le+AveY+k Lq
  Lsa007987 182 RKRREKINKRLRILQNLVPNG-----TKVDISTMLEEAVEYVKFLQ 222
                9******************97.....8******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088814.678172221IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474593.01E-14173238IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.105.1E-13177231IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003536.0E-11178227IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000834.29E-12181226No hitNo description
PfamPF000103.2E-8182222IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 249 aa     Download sequence    Send to blast
MESVVSMLGD WNSFNGGNVT EEAYFMAQLL DNFPLIPYDP QNAASSPLWP HLSLDGVDET  60
WVYLSDDTNS SLDFPSQNHN SSYGSRDLFP TLSGPTKDNE LSATSMKRSS SMVDVYENKD  120
KIKCRKSKKP VSTSNEDVDI SGQFMKIYRA DEDPKQAEIL SSNGKTKASR GSAADPQSVY  180
ARKRREKINK RLRILQNLVP NGTKVDISTM LEEAVEYVKF LQLQIKLLSS DDLWMYAPIA  240
YNGMDIGLH
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1181186RKRREK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023739023.10.0transcription factor bHLH139-like
SwissprotQ7XHI93e-53BH084_ARATH; Transcription factor bHLH84
TrEMBLA0A2J6K3V50.0A0A2J6K3V5_LACSA; Uncharacterized protein
STRINGGorai.005G231900.13e-59(Gossypium raimondii)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G14760.11e-55bHLH family protein