PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008008

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HRT-like

Protein Properties

Length: 410aa MW: 46090.4 Da PI: 9.9079

Description

HRT-like family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58691549	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-11204	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	HRT-like	56.2	5.8e-18	274	304	1	31
HRT-like 1 iCGviledGsvCkrqPvkgRKRCeeHKGmRi 31 iCGv+l++Gs+C+r+Pv+gRKRC HKGm++ Lsa008008 274 ICGVALGHGSICTRPPVEGRKRCVDHKGMKV 304 8****************************97 PP
2	HRT-like	55.4	1e-17	326	356	2	31
HRT-like 2 CGvile.dGsvCkrqPvkgRKRCeeHKGmRi 31 CGv+l+ dGs+C+r Pv gRKRCeeHKGmRi Lsa008008 326 CGVTLDdDGSICTRMPVAGRKRCEEHKGMRI 356 ***737********************7 PP

Sequence ? help Back to Top
Protein Sequence Length: 410 aa Download sequence Send to blast
MGRTFSDAAS TVPLLKREDC KRTKHDSAFS QWKILIGPRD WEDYLLSKEG AERYRTHNLP 60 NCSSCPGVYE LGIAVSLPQT ESKTSSQLSS KRIIPVYLGQ ADNVRTRLQQ YGRDGAHLEN 120 GWSNGEQTDR KLLGLFSDIF SYGFAIAFRW APMDNKKDAE KTETQLLKTF DYAWNRGMNG 180 ERRPVDIHQK LKTASNTKRV PISRVFKKLH LIPPKKVGLN IKHCDPPVLE NGSNFYTKQN 240 DTNILTRIFK FTRSRPSLVA NNHDTNNNSD DEQICGVALG HGSICTRPPV EGRKRCVDHK 300 GMKVNASVKV KSRLFTGTNT DTEVCCGVTL DDDGSICTRM PVAGRKRCEE HKGMRIKMQK 360 SYEGHKGIMV NGKIGVDSLT CVGVTVSGSF CRRKAGENSK FCWQHDQGRN

Sequence ? help Back to Top

Protein Sequence Length: 410 aa Download sequence Send to blast

MGRTFSDAAS TVPLLKREDC KRTKHDSAFS QWKILIGPRD WEDYLLSKEG AERYRTHNLP  60
NCSSCPGVYE LGIAVSLPQT ESKTSSQLSS KRIIPVYLGQ ADNVRTRLQQ YGRDGAHLEN  120
GWSNGEQTDR KLLGLFSDIF SYGFAIAFRW APMDNKKDAE KTETQLLKTF DYAWNRGMNG  180
ERRPVDIHQK LKTASNTKRV PISRVFKKLH LIPPKKVGLN IKHCDPPVLE NGSNFYTKQN  240
DTNILTRIFK FTRSRPSLVA NNHDTNNNSD DEQICGVALG HGSICTRPPV EGRKRCVDHK  300
GMKVNASVKV KSRLFTGTNT DTEVCCGVTL DDDGSICTRM PVAGRKRCEE HKGMRIKMQK  360
SYEGHKGIMV NGKIGVDSLT CVGVTVSGSF CRRKAGENSK FCWQHDQGRN

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023744471.1	0.0	protein EFFECTOR OF TRANSCRIPTION 2-like
TrEMBL	A0A2J6JSA8	0.0	A0A2J6JSA8_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400083817	1e-125	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT5G56780.1	2e-95	effector of transcription2