PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008094

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Protein Properties

Length: 229aa MW: 26372.4 Da PI: 9.9025

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-39638	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	54.6	2e-17	130	217	1	96
EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS B3 1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 f+k ++ s+v+ +l lp f++++ +k ++ +tl de+g +W k+ ++ + l++GWk F+++++L +gD ++F+l++ + f +v + Lsa008094 130 FLKPMLISHVSGGFWLGLPVYFCKSYL-PK-RDEIMTLVDENGDEWPTKY--LPRKTG--LSGGWKAFAEDHKLVDGDALIFQLIKPTVF--KVYI 217 89999*******************4.32.4568***********..555544..**********************997777..5555 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
Gene3D	G3DSA:2.40.330.10	2.3E-23	122	220	IPR015300	DNA-binding pseudobarrel domain
SuperFamily	SSF101936	3.34E-26	123	221	IPR015300	DNA-binding pseudobarrel domain
CDD	cd10017	3.83E-28	128	219	No hit	No description
PROSITE profile	PS50863	13.563	130	221	IPR003340	B3 DNA binding domain
Pfam	PF02362	8.1E-16	130	218	IPR003340	B3 DNA binding domain
SMART	SM01019	5.6E-24	130	221	IPR003340	B3 DNA binding domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 229 aa Download sequence Send to blast
MVAPKKVNYE ECRQKRLEEN KKRMEELKLN ALAQSLRIIS TPKPSPMKKV NRTPRKPLDL 60 SSVRRSNRVA DKPPPSYKEI LLEPLGMRRS YGMKVRDLSN RIYASDEDRE YASERAEELH 120 SKLQPDFPSF LKPMLISHVS GGFWLGLPVY FCKSYLPKRD EIMTLVDENG DEWPTKYLPR 180 KTGLSGGWKA FAEDHKLVDG DALIFQLIKP TVFKVYITRV NQAGDSDDA

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023730037.1	1e-169	B3 domain-containing protein At3g19184
Swissprot	Q1G3M3	1e-82	Y3918_ARATH; B3 domain-containing protein At3g19184
TrEMBL	A0A2J6MDH4	1e-168	A0A2J6MDH4_LACSA; Uncharacterized protein
STRING	PGSC0003DMT400066323	1e-108	(Solanum tuberosum)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G19184.1	5e-85	B3 family protein

Publications ? help Back to Top
Mantegazza O, et al. Analysis of the arabidopsis REM gene family predicts functions during flower development. Ann. Bot., 2014. 114(7): p. 1507-15 [PMID:25002525]