PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008157
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB_related
Protein Properties Length: 509aa    MW: 59659.6 Da    PI: 10.0528
Description MYB_related family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58692409PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding27.47.8e-09301340345
                      SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHH CS
  Myb_DNA-binding   3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwq 45 
                       WT+eE + l++  k++G++ Wk Ia+++g  + + ++k+ w+
        Lsa008157 301 QWTPEEIKFLKESYKKHGNK-WKMIAEELG--KHRFHVKDTWR 340
                      6*******************.********9..56677777666 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM007170.07225296IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.602.7E-9227315IPR009057Homeodomain-like
SMARTSM007170.0047298345IPR001005SANT/Myb domain
SuperFamilySSF466891.15E-8300344IPR009057Homeodomain-like
PROSITE profilePS500907.271302343IPR017877Myb-like domain
CDDcd001675.56E-4302330No hitNo description
PfamPF139212.4E-9302361No hitNo description
Gene3DG3DSA:1.10.10.603.3E-8316353IPR009057Homeodomain-like
PROSITE profilePS500907.12345414IPR017877Myb-like domain
SMARTSM007171.2349416IPR001005SANT/Myb domain
Gene3DG3DSA:1.10.10.605.7E-6354418IPR009057Homeodomain-like
SuperFamilySSF466892.16E-5394468IPR009057Homeodomain-like
PROSITE profilePS500906.632416469IPR017877Myb-like domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 509 aa     Download sequence    Send to blast
MGNTGEDAEA SPMMMEKKKK KKSKNMTNNH PEEIDNALPK EKPHKHKNKK RKSESNEDGG  60
DKAIQEDNGD LQKKRKKDSS KSALIKENNQ SQDDDPKPKK EKKKKKKKKK SKANEDGYNG  120
NLEEDNSDLQ KKHKKKKRKR DSETQTNDDP KPKKEKKKNR KSKSNEDGDK GNLEQQNEDP  180
KKPKKKKTKK VTFSGEVEIF PSSSNTTTAK RQQKTKPADN DNLVRGKRFT PEEDEIVKQA  240
VENYIISNNL GDDGLKMILN CKSHKGMKRC WQEIGNCIPY RPHTAIYHRA HILFEQSEHR  300
QWTPEEIKFL KESYKKHGNK WKMIAEELGK HRFHVKDTWR RIVKLENLKI GKWSQDEYQN  360
LYDMVNLDLQ MKITGQEKKS KHGMLRDNIP WTSISEKLTT RSDSTCCRKW YEQLTSSLVA  420
EKKWSDADDY WLVGKLYEID AACVEDVEWD ELLEHRSGEI CRKRWDQMVV CIGNHKSKTF  480
GEQVEILAKR YRPELAETRQ IWDDKPLVP
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17276KKRKK
2129138QKKHKKKKRK
3133138KKKKRK
4133139KKKKRKR
5152160KKEKKKNRK
6181189KPKKKKTKK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750108.10.0DNA-binding protein REB1-like
TrEMBLA0A2J6M8A20.0A0A2J6M8A2_LACSA; Uncharacterized protein
STRINGXP_009605412.11e-145(Nicotiana tomentosiformis)