PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008217

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 247aa MW: 28943.2 Da PI: 8.6955

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-21033	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	135.5	3.6e-42	6	139	3	127
NAM 3 pGfrFhPtdeelvveyLkkkvegkk.....leleevikevdiykvePwdLpk....kvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevl 93 pGfrF Pt+eelv++yLk k++++ e+++vi++++iy++ PwdLp+ ++k++ ++w+fF++r++++a+g r++r t+sgyWkatg+ v+ Lsa008217 6 PGFRFYPTEEELVTFYLKYKIQNRGttrllREIDRVIPQFHIYDFYPWDLPQyageRCKGDPEQWFFFVPRQENEARGGRTSRLTSSGYWKATGSPSVVY 105 8*******************99988887677779***********656666666778********************************* PP NAM 94 skkgelvglkktLvfykgrapkgektdWvmheyr 127 s++++ +g+k+t+vfy+grap+g+kt+W m+ey+ Lsa008217 106 SSGNRGIGIKRTMVFYNGRAPTGRKTKWKMNEYK 139 *******************************8 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.01E-47	4	167	IPR003441	NAC domain
PROSITE profile	PS51005	46.819	4	167	IPR003441	NAC domain
Pfam	PF02365	4.1E-23	6	139	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 247 aa Download sequence Send to blast
MEGGGPGFRF YPTEEELVTF YLKYKIQNRG TTRLLREIDR VIPQFHIYDF YPWDLPQYAG 60 ERCKGDPEQW FFFVPRQENE ARGGRTSRLT SSGYWKATGS PSVVYSSGNR GIGIKRTMVF 120 YNGRAPTGRK TKWKMNEYKA FEEEPSSNTN PTPELMQDWS LCRVYIKSNC LRAFDRRPSG 180 VVRSRPVHET HQDHDNVLHA TTERTTGSSY NHSYISSEQK NTTNSYSTIM EAMDQPLWDW 240 EEHRNYL

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	3e-34	6	169	19	167	NO APICAL MERISTEM PROTEIN
1ut4_B	3e-34	6	169	19	167	NO APICAL MERISTEM PROTEIN
1ut7_A	3e-34	6	169	19	167	NO APICAL MERISTEM PROTEIN
1ut7_B	3e-34	6	169	19	167	NO APICAL MERISTEM PROTEIN
3swm_A	4e-34	6	169	22	170	NAC domain-containing protein 19
3swm_B	4e-34	6	169	22	170	NAC domain-containing protein 19
3swm_C	4e-34	6	169	22	170	NAC domain-containing protein 19
3swm_D	4e-34	6	169	22	170	NAC domain-containing protein 19
3swp_A	4e-34	6	169	22	170	NAC domain-containing protein 19
3swp_B	4e-34	6	169	22	170	NAC domain-containing protein 19
3swp_C	4e-34	6	169	22	170	NAC domain-containing protein 19
3swp_D	4e-34	6	169	22	170	NAC domain-containing protein 19
4dul_A	3e-34	6	169	19	167	NAC domain-containing protein 19
4dul_B	3e-34	6	169	19	167	NAC domain-containing protein 19
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772341.1	0.0	NAC domain-containing protein 90-like isoform X2
Swissprot	Q9FMR3	2e-75	NAC90_ARATH; NAC domain-containing protein 90
TrEMBL	A0A2J6KUX6	0.0	A0A2J6KUX6_LACSA; Uncharacterized protein
STRING	XP_010271606.1	4e-84	(Nelumbo nucifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G44350.2	1e-72	NAC domain containing protein 61

Publications ? help Back to Top
Duarte JM, et al. Expression pattern shifts following duplication indicative of subfunctionalization and neofunctionalization in regulatory genes of Arabidopsis. Mol. Biol. Evol., 2006. 23(2): p. 469-78 [PMID:16280546]