PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008231
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 1509aa    MW: 172473 Da    PI: 6.4259
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58697143PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY66.34.7e-2113681422260
                 --SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY    2 dDgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60  
                 dDgy+WrKYGq++  g ++ rsYY+C s++C+vkk +e++  d+++++i Y+g+Hnh+k
  Lsa008231 1368 DDGYRWRKYGQRK--G-NNNRSYYKCVSSNCKVKKTIETNF-DGQITKIAYTGSHNHPK 1422
                 8**********84..4.467*********************.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF522001.83E-3247221IPR000157Toll/interleukin-1 receptor homology (TIR) domain
Gene3DG3DSA:3.40.50.101402.0E-1853213IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PROSITE profilePS5010423.97855219IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SMARTSM002555.2E-3156219IPR000157Toll/interleukin-1 receptor homology (TIR) domain
PfamPF015822.7E-23111245IPR000157Toll/interleukin-1 receptor homology (TIR) domain
SuperFamilySSF525403.11E-49251530IPR027417P-loop containing nucleoside triphosphate hydrolase
Gene3DG3DSA:3.40.50.3009.0E-10259422IPR027417P-loop containing nucleoside triphosphate hydrolase
PfamPF009315.4E-24259544IPR002182NB-ARC
PRINTSPR003649.2E-13279294No hitNo description
PRINTSPR003649.2E-13473487No hitNo description
SuperFamilySSF467852.18E-5509615IPR011991Winged helix-turn-helix DNA-binding domain
SuperFamilySSF520582.21E-23669924IPR032675Leucine-rich repeat domain, L domain-like
Gene3DG3DSA:3.80.10.103.7E-23672937IPR032675Leucine-rich repeat domain, L domain-like
PROSITE profilePS514504.693698719IPR001611Leucine-rich repeat
PRINTSPR003649.2E-13737753No hitNo description
PROSITE profilePS514506.334741763IPR001611Leucine-rich repeat
PROSITE profilePS514504.593862883IPR001611Leucine-rich repeat
PROSITE profilePS514507.519887908IPR001611Leucine-rich repeat
Gene3DG3DSA:2.20.25.803.1E-1913561422IPR003657WRKY domain
PROSITE profilePS5081115.69813621423IPR003657WRKY domain
SuperFamilySSF1182903.4E-1613651422IPR003657WRKY domain
SMARTSM007746.7E-1813671422IPR003657WRKY domain
PfamPF031064.9E-1613681421IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0007165Biological Processsignal transduction
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0005515Molecular Functionprotein binding
GO:0043531Molecular FunctionADP binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 1509 aa     Download sequence    Send to blast
XSKGDDLDYL GINHFLAHPD HKSKSQINHT FPLLIMVDLS EFLEEPSSSS SADRHRYDVF  60
LSFNGCDTRD TFIDHLHKAL MDADITTFLD DEMIKTEEDL KPEVKSAIKT GKVLNLELER  120
AIKESRACII VLSKNYANSP RCLDELMFIL EQRMSSNKIV VPIFYHVDPT HVRKQESTFG  180
LAMAEHRRMM EAEIDANKRS ELAEKIDQWK KALTEVANLK GRDVNGRRET EFIEEIVKYI  240
YRRLHTPLRS ALPLLIGMES SINYVTSWLK DASSHTTDVL TILGMGGIGK TSLAKYVYRS  300
HAHEFDTSSF IEDISRRCDE KLNRSNFIED ISPKSENFNG LLSLQKQLYD DISEQSSVQV  360
HDASTYTSEI ENVVACNKVF LVLDDIDSLD QLDALLGSKG FHPGSKIIIT TTNTWLIESS  420
ALFQKNAKPK HAQFFLNGLD KTESRTLLCF HAFKSNVTHA GYEEVLEELL KYCEGHPLAL  480
AILGKSLYNR DVVYWKEFIA SLEKDIDPDI ISVLRKSFDS LPSENDKELF KHIACFFVGM  540
DRDVATTILE ACDIETISGI TNLMDRCLLS IGRDNKLKMH QLLQNMGRFV VQQESPNRPW  600
ERSRLWCHEE SLKVLLQKKG TGNVLGLILD IKMLKNKKLR EAFELKTDTL SKMDKLMLLQ  660
LNYVQINGSY ENFPETLRWL CMHGFPWKSI PPDLPMENLV ALDMSYSNIE SFGIFNYPQR  720
SDKRLKKSIG SSSKDKVLLG SLKILNLSFC DQLSSLRGFE DLPVLERLIV RNCVSLLEVC  780
ESISQCGELV HIDLSYCKKL QKFPTSLGIL EKVNSLFVDG CNLDQSQITV SVKDSSLMPS  840
PLSAILHPMC DPQFLTLSFP RSLVRLSLAN NDLSTESFPM DFNWLSKLEE LYLDDNPIFS  900
LPNCVRSLSR LEILSMRNCN FLTSVEHPPK TLRELILVFD TEPLLRKVIF DLEMSPLKLS  960
YDWRWIMPSF FEIEGMVKIQ PMSGVEEKVL HSLGWTNLDF LNKMHKGKDA SYRGSKASEI  1020
QMYYEFGIFS TIYQGKELPE WFTHRSTGSS ISFIIPSSSS SSSSSSYNLK GLNFCYVKQF  1080
QIQNNESRYL PIIEIRNITK NRIWMYHHYC GSNVIVSGGC FVLLSHWMFG MNEMEGGDHV  1140
KITISVTKQH QLAKELGVKL VYDDGNNDEE EDALGYYKSW NHIIGGDLSA FQTTTGVYLL  1200
NIEGFTRHGI EVDPCYHGLI ERSTRYKEEQ VYFRALSQRK FGKICQTPKI LPSPSTGSFS  1260
FHAFNWQNLS SNIQNHEQSI KKEQKSFTDF SFQQPSNHQT EQLWNQQKPR EQDEKTFVQS  1320
EHPSQFQNFS EEISTIQTDS NSQMQSSQLG YAGSNINFEN QSSQIKTDDG YRWRKYGQRK  1380
GNNNRSYYKC VSSNCKVKKT IETNFDGQIT KIAYTGSHNH PKFQSTRISS ASNHSQMAQA  1440
SSNHEFDKLY YDYHGSGQFD SVASLENSSI YYDLDRSSSG RLKYDGMPDS KNGFISDGSS  1500
GGDEPISIY
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5ku7_A6e-36502441169TIR-NB-LRR type resistance protein RPV1
5ku7_B6e-36502441169TIR-NB-LRR type resistance protein RPV1
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751053.10.0TMV resistance protein N-like
TrEMBLA0A2J6MEV80.0A0A2J6MEV8_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12020.13e-50WRKY family protein