PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008254
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family RAV
Protein Properties Length: 324aa    MW: 36052.2 Da    PI: 8.4529
Description RAV family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-14286PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1AP237.94.4e-1253101155
        AP2   1 sgykGVrwdkkrgrWvAeIrdpsengkrkrfslgkfgtaeeAakaaiaarkkleg 55 
                s++kGV   + +grW A+I++      ++r++lg+f  + eAaka++ a ++++g
  Lsa008254  53 SRFKGVVPQP-NGRWGAQIYEK-----HQRVWLGTFNEEHEAAKAYDTAVQRFRG 101
                689***9788.8*********3.....5**********99************998 PP
2B31001.4e-31178277196
                EEEE-..-HHHHTT-EE--HHH.HTT....---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeeh....ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkv 96 
                f+k+ tpsdv+k++rlv+pk++ae+h    ++++ +++ l +ed   ++W+++++y+++s++yvltkGW++Fvk+++Lk+gD+v F+++  s+++l++ +
  Lsa008254 178 FEKTVTPSDVGKLNRLVIPKQHAEKHfplqSESTSKGVLLHFEDIGMKVWRFRYSYWNSSQSYVLTKGWSRFVKEKNLKAGDIVSFQRSTGSDKQLYIDW 277
                99*************************9996677899**************************************************8876888888877 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF008474.6E-753101IPR001471AP2/ERF domain
SuperFamilySSF541716.54E-1653109IPR016177DNA-binding domain
CDDcd000181.96E-2453108No hitNo description
PROSITE profilePS5103219.21654109IPR001471AP2/ERF domain
Gene3DG3DSA:3.30.730.103.4E-1954109IPR001471AP2/ERF domain
SMARTSM003801.1E-2754115IPR001471AP2/ERF domain
Gene3DG3DSA:2.40.330.102.9E-41174283IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-30176279IPR015300DNA-binding pseudobarrel domain
CDDcd100171.99E-28177266No hitNo description
PROSITE profilePS5086313.733178281IPR003340B3 DNA binding domain
PfamPF023626.4E-29178278IPR003340B3 DNA binding domain
SMARTSM010191.3E-24178281IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 324 aa     Download sequence    Send to blast
MDGSSTDDQS TTTETTSTVA APVTTPPLIG SGGSMVVDME GGLEAESRKL PSSRFKGVVP  60
QPNGRWGAQI YEKHQRVWLG TFNEEHEAAK AYDTAVQRFR GRDAVTNFKP LPADTEEAGL  120
EASFLNSHSK AEIVDMLRKH TYNDELQQSK RSCNLNKTPC TNGFRSGQQL VNAREQLFEK  180
TVTPSDVGKL NRLVIPKQHA EKHFPLQSES TSKGVLLHFE DIGMKVWRFR YSYWNSSQSY  240
VLTKGWSRFV KEKNLKAGDI VSFQRSTGSD KQLYIDWKTK NGSGSSNIQE QVQPVHMFRL  300
FGVNISSGGV ESSCNGGLFD NVSD
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1wid_A5e-5817528311120DNA-binding protein RAV1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtBinds specifically to bipartite recognition sequences composed of two unrelated motifs, 5'-CAACA-3' and 5'-CACCTG-3'. May function as negative regulator of plant growth and development. {ECO:0000269|PubMed:15040885, ECO:0000269|PubMed:9862967}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Down-regulated by brassinosteroid and zeatin. {ECO:0000269|PubMed:15040885}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751602.10.0AP2/ERF and B3 domain-containing transcription factor RAV1-like
SwissprotQ9ZWM91e-136RAV1_ARATH; AP2/ERF and B3 domain-containing transcription factor RAV1
TrEMBLA0A2J6M5610.0A0A2J6M561_LACSA; Uncharacterized protein
STRINGcassava4.1_010157m1e-156(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G13260.11e-135related to ABI3/VP1 1
Publications ? help Back to Top
  1. Matías-Hernández L,Aguilar-Jaramillo AE,Marín-González E,Suárez-López P,Pelaz S
    RAV genes: regulation of floral induction and beyond.
    Ann. Bot., 2014. 114(7): p. 1459-70
    [PMID:24812253]
  2. Mittal A,Jiang Y,Ritchie GL,Burke JJ,Rock CD
    AtRAV1 and AtRAV2 overexpression in cotton increases fiber length differentially under drought stress and delays flowering.
    Plant Sci., 2015. 241: p. 78-95
    [PMID:26706061]
  3. Huang Y,Feng CZ,Ye Q,Wu WH,Chen YF
    Arabidopsis WRKY6 Transcription Factor Acts as a Positive Regulator of Abscisic Acid Signaling during Seed Germination and Early Seedling Development.
    PLoS Genet., 2016. 12(2): p. e1005833
    [PMID:26829043]
  4. Zhao Y, et al.
    ABA receptor PYL9 promotes drought resistance and leaf senescence.
    Proc. Natl. Acad. Sci. U.S.A., 2016. 113(7): p. 1949-54
    [PMID:26831097]