PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008324

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

NAC

Protein Properties

Length: 354aa MW: 39967.1 Da PI: 7.4524

Description

NAC family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58684386	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	NAM	166.3	1.1e-51	5	132	1	128
NAM 1 lppGfrFhPtdeelvveyLkkkvegkkleleevikevdiykvePwdLpkkvkaeekewyfFskrdkkyatgkrknratksgyWkatgkdkevlsk.kgel 99 + pGfrFhPtdeelv++yLkkk++++ l++ e ik+vdiyk++PwdLp+ + ++ekewyf+++rd+ky+++ r+nr+t +g+Wkatg+d++++s+ +++ Lsa008324 5 MLPGFRFHPTDEELVNFYLKKKIQQRVLPI-ELIKQVDIYKYDPWDLPNLAPTGEKEWYFYCPRDRKYRNSVRPNRVTGAGFWKATGTDRPIYSSdGTNC 103 579*************************.89***********8888999***********************************955667 PP NAM 100 vglkktLvfykgrapkgektdWvmheyrl 128 +glkk+Lvfy+gra kg ktdW+mhe+rl Lsa008324 104 IGLKKSLVFYRGRAAKGIKTDWMMHEFRL 132 *************************98 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101941	3.79E-57	5	165	IPR003441	NAC domain
PROSITE profile	PS51005	56.074	5	165	IPR003441	NAC domain
Pfam	PF02365	1.4E-25	7	132	IPR003441	NAC domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 354 aa Download sequence Send to blast
MDDLMLPGFR FHPTDEELVN FYLKKKIQQR VLPIELIKQV DIYKYDPWDL PNLAPTGEKE 60 WYFYCPRDRK YRNSVRPNRV TGAGFWKATG TDRPIYSSDG TNCIGLKKSL VFYRGRAAKG 120 IKTDWMMHEF RLPSLSPSQS SPPKKILDKS LPPNDAWAIC RIFKKTSSMA QRALSHSWVS 180 SLPEHKSSDL YTESNQLSNN PDSRLSSPNS FTALDNPSYT PVNMTTSIVS PFSIQQTDFP 240 RGFMFSTVDI SGPITTTTSD VAPSLYNFDP DANKISESMG LGGPQQLFDT FSMNSPQVMQ 300 GSIDTTEWVK VRTGAFPLSL PSTVPDDWNL NMPWDSPTCP SQMSTTYSTN ECHT

Sequence ? help Back to Top

Protein Sequence Length: 354 aa Download sequence Send to blast

MDDLMLPGFR FHPTDEELVN FYLKKKIQQR VLPIELIKQV DIYKYDPWDL PNLAPTGEKE  60
WYFYCPRDRK YRNSVRPNRV TGAGFWKATG TDRPIYSSDG TNCIGLKKSL VFYRGRAAKG  120
IKTDWMMHEF RLPSLSPSQS SPPKKILDKS LPPNDAWAIC RIFKKTSSMA QRALSHSWVS  180
SLPEHKSSDL YTESNQLSNN PDSRLSSPNS FTALDNPSYT PVNMTTSIVS PFSIQQTDFP  240
RGFMFSTVDI SGPITTTTSD VAPSLYNFDP DANKISESMG LGGPQQLFDT FSMNSPQVMQ  300
GSIDTTEWVK VRTGAFPLSL PSTVPDDWNL NMPWDSPTCP SQMSTTYSTN ECHT

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1ut4_A	6e-54	7	168	19	168	NO APICAL MERISTEM PROTEIN
1ut4_B	6e-54	7	168	19	168	NO APICAL MERISTEM PROTEIN
1ut7_A	6e-54	7	168	19	168	NO APICAL MERISTEM PROTEIN
1ut7_B	6e-54	7	168	19	168	NO APICAL MERISTEM PROTEIN
4dul_A	6e-54	7	168	19	168	NAC domain-containing protein 19
4dul_B	6e-54	7	168	19	168	NAC domain-containing protein 19
Search in ModeBase

Functional Description ? help Back to Top
Source	Description
UniProt	Promotes periclinal root capforming cell divisions. Activates expression of its negative regulator SMB in a feedback loop for controlled switches in cell division plane. {ECO:0000269\|PubMed:19081078}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Repressed by SMB in oriented-divised root cap stem cells. {ECO:0000269\|PubMed:19081078}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023772954.1	0.0	protein FEZ-like
Swissprot	Q9ZVH0	1e-100	FEZ_ARATH; Protein FEZ
TrEMBL	A0A2J6KTM6	0.0	A0A2J6KTM6_LACSA; Uncharacterized protein
STRING	POPTR_0017s11830.1	1e-161	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G26870.1	1e-102	NAC family protein

Publications ? help Back to Top
Bennett T,van den Toorn A,Willemsen V,Scheres B Precise control of plant stem cell activity through parallel regulatory inputs. Development, 2014. 141(21): p. 4055-64 [PMID:25256342]