PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008467

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

HD-ZIP

Protein Properties

Length: 304aa MW: 34454.9 Da PI: 4.4727

Description

HD-ZIP family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-4156383	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Homeobox	60.9	2e-19	92	145	3	56
--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHH CS Homeobox 3 kRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakek 56 k++++t +q++ Le+ Fe ++++ +++ +LAk+lgL+ rqV +WFqNrRa++k Lsa008467 92 KKRRLTVDQVRFLEKSFELDNKLEPDRKIQLAKELGLQPRQVAIWFQNRRARWK 145 56689************************************************9 PP
2	HD-ZIP_I/II	127.3	6.7e-41	91	182	1	92
HD-ZIP_I/II 1 ekkrrlskeqvklLEesFeeeekLeperKvelareLglqprqvavWFqnrRARtktkqlEkdyeaLkraydalkeenerLekeveeLreelk 92 ekkrrl+ +qv++LE+sFe ++kLep+rK +la+eLglqprqva+WFqnrRAR+ktkqlEkdy+ L+++y++lk++ e+L ke+e+L++++ Lsa008467 91 EKKRRLTVDQVRFLEKSFELDNKLEPDRKIQLAKELGLQPRQVAIWFQNRRARWKTKQLEKDYDDLQESYNKLKANYENLLKEKEKLKSKVG 182 69**************************************************************************************9885 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF46689	1.58E-20	71	149	IPR009057	Homeodomain-like
PROSITE profile	PS50071	17.605	87	147	IPR001356	Homeobox domain
SMART	SM00389	2.4E-20	90	151	IPR001356	Homeobox domain
CDD	cd00086	1.57E-19	92	148	No hit	No description
Pfam	PF00046	1.1E-16	92	145	IPR001356	Homeobox domain
Gene3D	G3DSA:1.10.10.60	5.6E-20	94	154	IPR009057	Homeodomain-like
PRINTS	PR00031	6.6E-6	118	127	IPR000047	Helix-turn-helix motif
PROSITE pattern	PS00027	0	122	145	IPR017970	Homeobox, conserved site
PRINTS	PR00031	6.6E-6	127	143	IPR000047	Helix-turn-helix motif
Pfam	PF02183	5.8E-13	147	188	IPR003106	Leucine zipper, homeobox-associated

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0006355	Biological Process	regulation of transcription, DNA-templated
GO:0003700	Molecular Function	transcription factor activity, sequence-specific DNA binding
GO:0043565	Molecular Function	sequence-specific DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 304 aa Download sequence Send to blast
MAARSYLYGG ASGGEAESGG SVLLTNKRVH CSSSLNPVDS FFASRSSPFQ GSRSMVSFED 60 RGNGSGGQFF QSFDHEDNGD DEYDEYFQQP EKKRRLTVDQ VRFLEKSFEL DNKLEPDRKI 120 QLAKELGLQP RQVAIWFQNR RARWKTKQLE KDYDDLQESY NKLKANYENL LKEKEKLKSK 180 VGELSDKLMI QEKGTSDASS TKSPCEPQLC ELVLEEDLSK NLNLTCGPEG DLNVVFERGD 240 SSYVFEQEQS DGSLDEENDN FGKMFLPSMD GYTSPKIENV DPHAVNSYYL GLAGDDQAFG 300 FWSY

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	139	147	RRARWKTKQ

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023739287.1	0.0	homeobox-leucine zipper protein HAT5-like
TrEMBL	A0A2J6K3M6	0.0	A0A2J6K3M6_LACSA; Uncharacterized protein
STRING	POPTR_0015s07640.1	7e-98	(Populus trichocarpa)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G01470.1	4e-35	homeobox 1