PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008481
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 555aa    MW: 61850.1 Da    PI: 9.6694
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58691522PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-42661PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B352.31e-16421181395
                TT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3  13 sgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                s+ l lp kfa + ++k  +++   led++g++W+v++  +k +g   +++GW+ F+ a+gLk+gD +vF+++ +s f  vv+
  Lsa008481  42 SKVLFLPPKFAHTVQKK--SGRSTWLEDSNGEKWKVRF--TKIDGLLAFEEGWNTFCLAHGLKVGDLLVFHYIMESYF--VVS 118
                45699******666655..6678***************..*******************************9976666..665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.40.330.107.0E-1929125IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS5086313.56330123IPR003340B3 DNA binding domain
SuperFamilySSF1019363.92E-2130125IPR015300DNA-binding pseudobarrel domain
CDDcd100175.23E-1631120No hitNo description
PfamPF023627.3E-1532117IPR003340B3 DNA binding domain
SMARTSM010195.7E-1232123IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.107.7E-7468550IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019369.81E-7470550IPR015300DNA-binding pseudobarrel domain
PROSITE profilePS508638.473488551IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 555 aa     Download sequence    Send to blast
MAPKGEACAE CTQNCLLMHK KEKNPSPVAT SFVKVMFGDE YSKVLFLPPK FAHTVQKKSG  60
RSTWLEDSNG EKWKVRFTKI DGLLAFEEGW NTFCLAHGLK VGDLLVFHYI MESYFVVSMY  120
GESGCPENRH FGFTPNPMKE TRKEHKLTTV DHHIPSNATT NGNHHHLEIK DSVGSQQKEI  180
SIKKKRTDDM MSPNTHDHLV ASSSQSQPSD SDKEKSQRSK PLVNTNPDNT NCETPTIVKN  240
NHSAPVQDSE DEHLGVNSLQ KHDVSILQTS PKKSSGGRKD DVAAGGGGDG TKVKESGKLL  300
ETLSKKMTEK PKENTFKPSI KKRLRSTMFP MTPTKIVKKD SVLTSQTDVS GSKSRNDDGA  360
PASSPKPIVS PPKIIKKEPI SAREEHDSRF HNVGVPHKPI AKPMEMPNKS PPTLKRDSTG  420
VMKTSSSGKT DFNNSHKEES NNFLQKVKPE PVDYEDTPWT GPTNTSFSAV MSSYQYLEIP  480
KWVKLKSKVI LLRNKADLWP VLYQNKVGLK ALTQSWEAFA RQRGIQIGDN CEFVLESEAN  540
SNFTCSVFTV HVTSK
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023772859.10.0uncharacterized protein LOC111921507
TrEMBLA0A2J6KTU10.0A0A2J6KTU1_LACSA; Uncharacterized protein