PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008582
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 229aa    MW: 25470 Da    PI: 6.7978
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-4579PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY89.13.6e-28127183360
                -SS-EEEEEEE--TT-SS-EEEEEE-STT---EEEEEE-SSSTTEEEEEEES--SS-- CS
       WRKY   3 DgynWrKYGqKevkgsefprsYYrCtsagCpvkkkversaedpkvveitYegeHnhek 60 
                DgynWrKYGqK vkg++f rsYY+Ct+ +Cp++k+ve+s+ d++++ei Y  +H+h+k
  Lsa008582 127 DGYNWRKYGQKLVKGNTFVRSYYKCTFGNCPARKQVEHSH-DGHITEINYLWKHEHPK 183
                9**************************************9.***************85 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.801.7E-25120184IPR003657WRKY domain
SuperFamilySSF1182902.62E-23123184IPR003657WRKY domain
SMARTSM007741.6E-27125183IPR003657WRKY domain
PROSITE profilePS5081121.264127184IPR003657WRKY domain
PfamPF031066.6E-22127182IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 229 aa     Download sequence    Send to blast
MDNTSNNLQL TVVPESKEQP SLSNQERNPE PIHDMHQSPS SDSGTHVSNS NQEPPVTPKK  60
ASSNTSQQTP PPPGSISEAD QENYIVAIRP EKGLDKLPLR RNIDNLTPTQ SDQGITFSKL  120
PEKPTGDGYN WRKYGQKLVK GNTFVRSYYK CTFGNCPARK QVEHSHDGHI TEINYLWKHE  180
HPKPINTLVK GSAFVLPIQS KASDDLSLVT SEASHEPETN QLQLVPVPX
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
2ayd_A1e-121271841674WRKY transcription factor 1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023770082.11e-167WRKY transcription factor SUSIBA2 isoform X3
TrEMBLA0A2J6L0291e-163A0A2J6L029_LACSA; Uncharacterized protein
STRINGXP_009605529.17e-43(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G04880.23e-26zinc-dependent activator protein-1