PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008609
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family Trihelix
Protein Properties Length: 332aa    MW: 38140.7 Da    PI: 6.3944
Description Trihelix family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-27514PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1trihelix751.2e-23124221186
   trihelix   1 rWtkqevlaLiearremeerlrrgk...........lkkplWeevskkmrergferspkqCkekwenlnkrykkikegekkr.tsessstcpyfdqle 86 
                +W++ +v++Li+a+++++e+   +            +kk++W++vsk+m+erg  +sp+qC++k+++lnkryk+++e+ +++ ++e++++ +++d ++
  Lsa008609 124 KWSDPMVRLLITAVSYIGEDAAMEYgggsrrkysnlQKKGKWKSVSKVMAERGHFVSPQQCEDKFNDLNKRYKRLNEILGRGtSCEVVENPSLLDIMD 221
                7**************888777753222345566777**********************************************669****999999887 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF138372.2E-22122247No hitNo description
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MDGNLSSGNM ISGAGGSFDL QNSMRVHHQQ HNNPFTLHQH HLHQPQSNRQ QIHPSIHENF  60
PLRMGAIQDC DRHTQTISLV DFSKGERGKS SISDEDEPSF AEDGHDSRHD DTRGKSMSPW  120
QRVKWSDPMV RLLITAVSYI GEDAAMEYGG GSRRKYSNLQ KKGKWKSVSK VMAERGHFVS  180
PQQCEDKFND LNKRYKRLNE ILGRGTSCEV VENPSLLDIM DHVSDKGKEE VRKILSSKHL  240
YYEEMCSYHN GNRLHLPPDL ELQRSLRIAL KTRDDHETND GRKGSHEDDH DDEDHDAYMD  300
DHDHDHDHDE YDDHHPHHHG LQLDPRTGYG AG
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023758038.10.0uncharacterized protein LOC111906507
TrEMBLA0A2J6LR100.0A0A2J6LR10_LACSA; Uncharacterized protein
STRINGEOY167051e-132(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G21200.11e-113sequence-specific DNA binding transcription factors