PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008663
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family B3
Protein Properties Length: 554aa    MW: 61453.1 Da    PI: 8.8293
Description B3 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-6708PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1B355.61e-1717981299
               HTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE-S CS
         B3 12 ksgrlvlpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfrk 99
               + + l +p kf ++ +gk +++ t++l+ +sg++W   l   ++s++ ++ +GW  Fv+++ L+ gD++vF++dg+  f  +v++f++
  Lsa008663 17 SFDKLKIPSKFGKHLEGK-TCG-TVSLMGPSGNTWHADL--AQQSDGLFILDGWAAFVRDHFLENGDSLVFRYDGNLHF--TVQIFDQ 98
               456799******666777.565.9***************..9*****99999*********************997777..9**9997 PP
2B343.94.2e-142323161198
                HHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE...EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
         B3  11 lksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy.rkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98 
                + s  l +p +fa ++   ++++++++l++++g+sW v+ i  ++ + ++++ +GW +Fv+ n+++++D+++F+l+g+ e   +v ++r
  Lsa008663 232 SGSYTLNVPYQFAMAYL--PNCKVKIVLQNLKGESWIVNSIPtTRVQTSHTFCGGWLNFVRGNNINVRDVCIFELVGNCEM--RVNILR 316
                45567899*****9996..4699*****************77566666699************************997555..677665 PP
3B345.81.1e-14439534196
                EEEE-..-HHHHTT-EE--HHH.HTT---..--SEEEEEETTS-EEEEEE....EEETTE...EEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS
         B3   1 ffkvltpsdvlksgrlvlpkkfaeehggkkeesktltledesgrsWevkliy..rkksgr...yvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 
                f+ v+++ +v+ s  l +p +f  eh   + + ++++l++++g+ W+v+ i   +    +   +++ +GW +Fv++ng++ gD+++F+l+g+ e   +v+
  Lsa008663 439 FVRVMKKFNVSGSYTLKVPYQFSMEHL--PSCRTEIVLQNLKGECWTVNSIPtlK-VETMhtlHTFCGGWMGFVRENGIQMGDICIFELVGSCEM--RVH 533
                667777888999999*******99996..45889***************976533.33333566677**********************995444..666 PP

                E CS
         B3  96 v 96 
                +
  Lsa008663 534 I 534
                5 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF1019362.55E-222101IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.107.2E-223101IPR015300DNA-binding pseudobarrel domain
CDDcd100171.05E-18697No hitNo description
SMARTSM010191.6E-10899IPR003340B3 DNA binding domain
PfamPF023621.2E-151398IPR003340B3 DNA binding domain
PROSITE profilePS5086313.5631999IPR003340B3 DNA binding domain
Gene3DG3DSA:2.40.330.101.3E-21214316IPR015300DNA-binding pseudobarrel domain
SuperFamilySSF1019362.75E-22215316IPR015300DNA-binding pseudobarrel domain
CDDcd100172.43E-17220316No hitNo description
SMARTSM010193.7E-12222318IPR003340B3 DNA binding domain
PROSITE profilePS5086312.421222318IPR003340B3 DNA binding domain
PfamPF023621.6E-11230316IPR003340B3 DNA binding domain
SuperFamilySSF1019361.18E-22434535IPR015300DNA-binding pseudobarrel domain
Gene3DG3DSA:2.40.330.101.2E-20434535IPR015300DNA-binding pseudobarrel domain
CDDcd100173.72E-21437534No hitNo description
SMARTSM010191.3E-10439538IPR003340B3 DNA binding domain
PfamPF023622.2E-12439534IPR003340B3 DNA binding domain
PROSITE profilePS5086312.548439538IPR003340B3 DNA binding domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 554 aa     Download sequence    Send to blast
MDARRPHFIK GFNPNISFDK LKIPSKFGKH LEGKTCGTVS LMGPSGNTWH ADLAQQSDGL  60
FILDGWAAFV RDHFLENGDS LVFRYDGNLH FTVQIFDQSS CEKETAFSAE CHQDLSIFDQ  120
HFGKKREREY ASLLSNMVDG VPKKPRSSQS HNEPTNISEQ QTMDGVADLL NGSEFCGSGL  180
KNSITPALPV SAVRPNEEEL GRISASEAEK IAQTFNSSFP HFSQVMKKFN ISGSYTLNVP  240
YQFAMAYLPN CKVKIVLQNL KGESWIVNSI PTTRVQTSHT FCGGWLNFVR GNNINVRDVC  300
IFELVGNCEM RVNILRVRQE AVEYEEQQQQ QGSSDVKALT HKTSGKLAKK AKGKSRKTQK  360
LSMMEGQKVA FSIEKVKLGI AAKGSVVGSQ SKTTTNGKPG KERVLQEKRG SSMTGCMSMK  420
SAPEEKMAAE SFVSSFPYFV RVMKKFNVSG SYTLKVPYQF SMEHLPSCRT EIVLQNLKGE  480
CWTVNSIPTL KVETMHTLHT FCGGWMGFVR ENGIQMGDIC IFELVGSCEM RVHISSLGNQ  540
LTATATGPSN QLGT
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728539.10.0B3 domain-containing protein Os01g0723500-like isoform X1
TrEMBLA0A2J6KSA30.0A0A2J6KSA3_LACSA; Uncharacterized protein
STRINGXP_009588428.10.0(Nicotiana tomentosiformis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G18990.12e-18B3 family protein