PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa008785

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

CAMTA

Protein Properties

Length: 839aa MW: 94160.4 Da PI: 6.3176

Description

CAMTA family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58695910	PU_ref	Unigene	View CDS
PUT-187a-Lactuca_sativa-8658	PU_unref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	CG-1	170.2	3.2e-53	13	128	3	117
CG-1 3 ke.kkrwlkneeiaaiLenfekheltlelktrpksgsliLynrkkvryfrkDGyswkkkkdgktvrEdhekLKvggvevlycyYahseenptfqrrcywl 101 +e + rwlk+ e++ iL+n+++ +l+ e++++p+sgsl+L++rk++r+frkDG+sw++kkdgk++ E+he+LKvg+vevl+cyYah+eenp+fqrr+yw+ Lsa008785 13 EEaQVRWLKAGEVLFILQNYDEKQLSREAPQQPPSGSLFLFDRKVLRFFRKDGHSWRRKKDGKAIGEAHERLKVGNVEVLNCYYAHGEENPNFQRRSYWM 112 45599********************************************************************************************* PP CG-1 102 Leeelekivlvhylev 117 L++++e+ivlvhy+++ Lsa008785 113 LNSAKEHIVLVHYRDT 128 ***********997 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51437	73.485	8	134	IPR005559	CG-1 DNA-binding domain
SMART	SM01076	2.2E-72	11	129	IPR005559	CG-1 DNA-binding domain
Pfam	PF03859	5.9E-48	14	127	IPR005559	CG-1 DNA-binding domain
Gene3D	G3DSA:2.60.40.10	1.2E-6	314	400	IPR013783	Immunoglobulin-like fold
CDD	cd00102	0.0012	318	400	No hit	No description
Pfam	PF01833	1.4E-6	318	389	IPR002909	IPT domain
SuperFamily	SSF81296	7.8E-16	318	399	IPR014756	Immunoglobulin E-set
Gene3D	G3DSA:1.25.40.20	1.4E-14	487	587	IPR020683	Ankyrin repeat-containing domain
SuperFamily	SSF48403	2.95E-15	491	587	IPR020683	Ankyrin repeat-containing domain
PROSITE profile	PS50297	14	493	585	IPR020683	Ankyrin repeat-containing domain
CDD	cd00204	1.08E-13	513	585	No hit	No description
Pfam	PF12796	2.5E-7	514	586	IPR020683	Ankyrin repeat-containing domain
SMART	SM00248	0.0028	526	558	IPR002110	Ankyrin repeat
PROSITE profile	PS50088	10.232	526	558	IPR002110	Ankyrin repeat
SMART	SM00015	9.5	638	660	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	8.242	639	668	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	9.82E-6	645	661	IPR027417	P-loop containing nucleoside triphosphate hydrolase
SMART	SM00015	0.81	692	714	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	7.84	693	722	IPR000048	IQ motif, EF-hand binding site
SuperFamily	SSF52540	9.82E-6	693	744	IPR027417	P-loop containing nucleoside triphosphate hydrolase
Pfam	PF00612	0.013	694	713	IPR000048	IQ motif, EF-hand binding site
SMART	SM00015	0.17	715	737	IPR000048	IQ motif, EF-hand binding site
PROSITE profile	PS50096	9.011	717	740	IPR000048	IQ motif, EF-hand binding site
Pfam	PF00612	4.5E-4	718	737	IPR000048	IQ motif, EF-hand binding site

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0005634	Cellular Component	nucleus
GO:0003677	Molecular Function	DNA binding
GO:0005515	Molecular Function	protein binding

Sequence ? help Back to Top
Protein Sequence Length: 839 aa Download sequence Send to blast
MTTSGYDIRD ILEEAQVRWL KAGEVLFILQ NYDEKQLSRE APQQPPSGSL FLFDRKVLRF 60 FRKDGHSWRR KKDGKAIGEA HERLKVGNVE VLNCYYAHGE ENPNFQRRSY WMLNSAKEHI 120 VLVHYRDTSQ TTPGRNIAGP LSAFSPGTSS NLVQSSNSYA SQLTSNETNG HYYENTSSPS 180 CIEVSSDSIT KAKGISHEIL MKTETVTGSP NSEVDQALKR IEEQLSLDEG HLEEIDALYN 240 DNENSHDFGL TMDEQSYDNI FKGYQASMFL PHSLEDLKFS SNKYGSDSDY STMFDQEHSQ 300 TPPGPDSSLT IAQEQKFTIR EISPEWGYAN ESTKVFFIGT FTCDSWTCMF GDTEVPVQII 360 QEGVICCQAP PCLLPGKVTV SITSNNQEPH TEIKEFEYRD KPSSYKHNSS ETESHKSLEE 420 LLLLVRLVQM LQFDQKGEST ETEDSWSQLI EALLDGSLAS SNAMEWILEQ LLKDKLHQWL 480 SSRLKNNSAL SKREQGMIHM VSGLGFCWAL SPILNSGVSI NFRDINGWTA LHWAARFGRE 540 KMVAALLACG AYAGAITDPS KQDPTGKTPA SIASACGHKG LAGYLSEMTL TGHLTSLKLQ 600 ETEVSRTCDD VEAERTVNSL GVHDDHIYLK DTLSAVRNAT QAAARIQSAF RAHSFRRRQQ 660 KESEGSEDEY GLLSSDIEGL SKGSKLTFGN AHDHHAALSI QKKYRGWKGR KDFVSFRQKI 720 VKIQALVRGH QVRKSYKVIC WAVGIVEKVI LRWRRKGAGL RGFRQGSAEE DEDDDEDVVK 780 AFRKEKVDVA IGEAVARVLA MVDSKPARQQ YHRMLQNHRQ AMAEHRGFGG GVASMEIDD

Sequence ? help Back to Top

Protein Sequence Length: 839 aa Download sequence Send to blast

MTTSGYDIRD ILEEAQVRWL KAGEVLFILQ NYDEKQLSRE APQQPPSGSL FLFDRKVLRF  60
FRKDGHSWRR KKDGKAIGEA HERLKVGNVE VLNCYYAHGE ENPNFQRRSY WMLNSAKEHI  120
VLVHYRDTSQ TTPGRNIAGP LSAFSPGTSS NLVQSSNSYA SQLTSNETNG HYYENTSSPS  180
CIEVSSDSIT KAKGISHEIL MKTETVTGSP NSEVDQALKR IEEQLSLDEG HLEEIDALYN  240
DNENSHDFGL TMDEQSYDNI FKGYQASMFL PHSLEDLKFS SNKYGSDSDY STMFDQEHSQ  300
TPPGPDSSLT IAQEQKFTIR EISPEWGYAN ESTKVFFIGT FTCDSWTCMF GDTEVPVQII  360
QEGVICCQAP PCLLPGKVTV SITSNNQEPH TEIKEFEYRD KPSSYKHNSS ETESHKSLEE  420
LLLLVRLVQM LQFDQKGEST ETEDSWSQLI EALLDGSLAS SNAMEWILEQ LLKDKLHQWL  480
SSRLKNNSAL SKREQGMIHM VSGLGFCWAL SPILNSGVSI NFRDINGWTA LHWAARFGRE  540
KMVAALLACG AYAGAITDPS KQDPTGKTPA SIASACGHKG LAGYLSEMTL TGHLTSLKLQ  600
ETEVSRTCDD VEAERTVNSL GVHDDHIYLK DTLSAVRNAT QAAARIQSAF RAHSFRRRQQ  660
KESEGSEDEY GLLSSDIEGL SKGSKLTFGN AHDHHAALSI QKKYRGWKGR KDFVSFRQKI  720
VKIQALVRGH QVRKSYKVIC WAVGIVEKVI LRWRRKGAGL RGFRQGSAEE DEDDDEDVVK  780
AFRKEKVDVA IGEAVARVLA MVDSKPARQQ YHRMLQNHRQ AMAEHRGFGG GVASMEIDD

Functional Description ? help Back to Top
Source	Description
UniProt	Transcription activator that binds to the DNA consensus sequence 5'-[ACG]CGCG[GTC]-3' (By similarity). Regulates transcriptional activity in response to calcium signals (Probable). Binds calmodulin in a calcium-dependent manner (By similarity). Involved together with CAMTA2 and CAMTA3 in the positive regulation of a general stress response (PubMed:25039701). {ECO:0000250\|UniProtKB:Q8GSA7, ECO:0000269\|PubMed:25039701, ECO:0000305\|PubMed:11925432}.

Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: By heat shock, UVB, salt, wounding, ethylene, methyl jasmonate, abscisic acid, H(2)O(2) and salicylic acid (PubMed:12218065). Induced by cold stress (PubMed:28351986). {ECO:0000269\|PubMed:12218065, ECO:0000269\|PubMed:28351986}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023770715.1	0.0	calmodulin-binding transcription activator 4-like
Swissprot	Q9FYG2	0.0	CMTA4_ARATH; Calmodulin-binding transcription activator 4
TrEMBL	A0A2J6KYI7	0.0	A0A2J6KYI7_LACSA; Uncharacterized protein
STRING	Migut.E00009.1.p	0.0	(Erythranthe guttata)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT1G67310.1	1e-172	Calmodulin-binding transcription activator protein with CG-1 and Ankyrin domains

Publications ? help Back to Top
Benn G, et al. A key general stress response motif is regulated non-uniformly by CAMTA transcription factors. Plant J., 2014. 80(1): p. 82-92 [PMID:25039701] Kidokoro S, et al. Different Cold-Signaling Pathways Function in the Responses to Rapid and Gradual Decreases in Temperature. Plant Cell, 2017. 29(4): p. 760-774 [PMID:28351986]