PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
Home  TFext  BLAST  Prediction  Download  Help  About  Links  PlantRegMap
(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008822
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 274aa    MW: 31133.9 Da    PI: 5.1203
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58684752PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding47.34.9e-151461148
                     TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     +g+WT+eEd +l++ +   G  +W+++++  g++R++k+c++rw +yl
        Lsa008822 14 KGPWTAEEDNKLINFILTSGQCCWRAVPKLAGLRRCGKSCRLRWTNYL 61
                     79********************************************97 PP
2Myb_DNA-binding53.84.5e-1770111447
                      S-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS
  Myb_DNA-binding   4 WTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 
                       T+ E++l +d++++lG++ W++Ia++++ gRt++++k++w+++
        Lsa008822  70 LTESEEQLVIDLHARLGNR-WSKIAARLP-GRTDNEIKNHWNTH 111
                      69*****************.*********.************97 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.602.0E-21563IPR009057Homeodomain-like
PROSITE profilePS5129413.267961IPR017930Myb domain
SuperFamilySSF466896.53E-2711108IPR009057Homeodomain-like
SMARTSM007171.7E-121363IPR001005SANT/Myb domain
PfamPF002496.8E-141461IPR001005SANT/Myb domain
CDDcd001671.88E-81661No hitNo description
PROSITE profilePS5129427.48462116IPR017930Myb domain
Gene3DG3DSA:1.10.10.603.6E-2564117IPR009057Homeodomain-like
SMARTSM007171.7E-1566114IPR001005SANT/Myb domain
PfamPF002492.1E-1569111IPR001005SANT/Myb domain
CDDcd001671.23E-1171112No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 274 aa     Download sequence    Send to blast
MGRQPCCDKL GVKKGPWTAE EDNKLINFIL TSGQCCWRAV PKLAGLRRCG KSCRLRWTNY  60
LRPDLKRGLL TESEEQLVID LHARLGNRWS KIAARLPGRT DNEIKNHWNT HIKKKLIKRG  120
IDPVTHEPLE KESPDTKTSS CPGEHSSESE NNSLSPLLES INATGNSEEN STSSPPENCS  180
TLSDEPHKLF DSLCEDEKLL SYLLGDDEPP LVDTTTWELP NTAQNFNNFS SWDDCATWLF  240
DCQDFGVHDF ELNCFNEVEM NILDRLETGK KQQK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-28141167108B-MYB
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtR2R3 MYB-type transcription factor controlling the production of volatile benzoides in flowers by regulating the shikimate pathway, namely by activation of the 5-enol-pyruvylshikimate-3-phosphate synthase gene. This scent, mostly produced in the evening and night by the petals, attracts the pollinators. Anthocyanins production is not controlled by ODO1 as color and scent are produced at different stages of development. {ECO:0000269|PubMed:15805488}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Increases before the onset of volatile emission at the end of the light period, peaks at night and decreases when volatile emission declines early morning.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023765364.10.0protein ODORANT1-like
SwissprotQ50EX61e-106ODO1_PETHY; Protein ODORANT1
TrEMBLA0A2J6LAT00.0A0A2J6LAT0_LACSA; Uncharacterized protein
STRINGEOY244591e-122(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G12350.12e-91myb domain protein 42
Publications ? help Back to Top
  1. Verdonk JC,Haring MA,van Tunen AJ,Schuurink RC
    ODORANT1 regulates fragrance biosynthesis in petunia flowers.
    Plant Cell, 2005. 17(5): p. 1612-24
    [PMID:15805488]