PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008862
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 353aa    MW: 39952.3 Da    PI: 6.8766
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58685933PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H214.88.2e-05186205120
                EEETTTTEEESSHHHHHHHH CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHi 20 
                ++Cp C k+F+r  n++ H+
  Lsa008862 186 FSCPLCFKTFNRYNNMQMHM 205
                89*****************9 PP
2zf-C2H214.40.00011270292123
                EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2   1 ykCpdCgksFsrksnLkrHirtH 23 
                + C +Cgk F  + + ++H +++
  Lsa008862 270 FMCRKCGKAFAVRGDWRTHEKNC 292
                89*****************9987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SMARTSM003550.61186208IPR015880Zinc finger, C2H2-like
PROSITE profilePS501579.66186213IPR007087Zinc finger, C2H2
Gene3DG3DSA:3.30.160.603.0E-5186205IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
PROSITE patternPS000280188208IPR007087Zinc finger, C2H2
SuperFamilySSF576671.75E-6252290No hitNo description
Gene3DG3DSA:3.30.160.609.5E-6266290IPR013087Zinc finger C2H2-type/integrase DNA-binding domain
SMARTSM0035549270290IPR015880Zinc finger, C2H2-like
PROSITE profilePS501578.808270290IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003676Molecular Functionnucleic acid binding
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 353 aa     Download sequence    Send to blast
MSSDHPYSTY YNGSWFNLNP NYYYLSPAPA APPPLSYSSF THYYQPSPPS PPLREALPLL  60
SLSPSRRSPN QNQEYLSSTT NDSCSTTTTT IAMDVDHHKD KTTTEDDDHE TVTVALHLGL  120
PSPSFSEADL ITRLSTNSNN NTTEADHKEV EEEEGTHSNG YLTSALNKGQ YWIPTPAQIL  180
IGPTQFSCPL CFKTFNRYNN MQMHMWGHGS QYRRGPESLR GTQPTAMLRL PCYCCAPGCR  240
NNIDHPRAKP LKDFRTLQTH YKRKHGIKPF MCRKCGKAFA VRGDWRTHEK NCGKLWYCSC  300
GSDFKHKRSL KDHIKAFGNG HAAYGIDDCC FELEEEEAAS EIEQDNESSH CDN
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for normal differentiation of the ovary transmitting tract cells and pollen tube growth. In Arabidopsis, the transmitting tract facilitates the transport of pollen tubes to the ovules for fertilization (PubMed:17600712). May play a role in the regulation of AGL8/FUL, which is required for normal pattern of cell division, expansion and differentiation during morphogenesis of the silique (PubMed:23515580). Plays a role in replum development by the activation of the homeobox protein KNAT1 (PubMed:25039392). {ECO:0000269|PubMed:17600712, ECO:0000269|PubMed:23515580, ECO:0000269|PubMed:25039392}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023751483.10.0zinc finger protein WIP2-like
SwissprotQ9SVY11e-132ZWIP2_ARATH; Zinc finger protein WIP2
TrEMBLA0A2J6M5830.0A0A2J6M583_LACSA; Uncharacterized protein
STRINGXP_010102319.11e-159(Morus notabilis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G57670.11e-121C2H2 family protein
Publications ? help Back to Top
  1. Crawford BC, et al.
    Plant development. Genetic control of distal stem cell fate within root and embryonic meristems.
    Science, 2015. 347(6222): p. 655-9
    [PMID:25612610]
  2. Boex-Fontvieille E, et al.
    An Ethylene-Protected Achilles' Heel of Etiolated Seedlings for Arthropod Deterrence.
    Front Plant Sci, 2016. 7: p. 1246
    [PMID:27625656]