PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa008880
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 313aa    MW: 34788.1 Da    PI: 5.1144
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-539PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH34.63.5e-11147190755
                HHHHHHHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
        HLH   7 erErrRRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                + Er+RR+ +++++  Lr+l+P+      +K++Ka+i+  A +YI++Lq
  Lsa008880 147 ISERKRRSGMKEKLYALRSLVPNI-----TKMDKASIVGDAARYIQELQ 190
                67*********************7.....7******************9 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088815.053140189IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474596.41E-16140204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000835.86E-13142194No hitNo description
Gene3DG3DSA:4.10.280.101.2E-14142204IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SMARTSM003535.0E-14146195IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.1E-8147190IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 313 aa     Download sequence    Send to blast
MDERADSSEN PMSHFNGGSF NMFPVDFTQE TEFEKFISGF RGEIADPIEK FCLDYECNHL  60
TESCTDLQLL PLPYEAVVTG GVGSGIGGYD AMGLHSNLIW NQEGQDLKDS VVFGDDNSSE  120
TATTGNPDTP TRRSSGGAKG DRSRTLISER KRRSGMKEKL YALRSLVPNI TKMDKASIVG  180
DAARYIQELQ TQARNLKVEI ETIEALENQK TPPQNSKKIH ATNSFPILKK ISKMDVFQVE  240
EKGYYVRLVC NKGRGVGVSL HKALESITSF HVQNSNLATD GDTFVLTFNL NVTVFEFDIN  300
FAKFEAMACW GFS
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023738089.10.0transcription factor FER-LIKE IRON DEFICIENCY-INDUCED TRANSCRIPTION FACTOR
TrEMBLA0A2J6K6370.0A0A2J6K637_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G28160.16e-64FER-like regulator of iron uptake