PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009015
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family WRKY
Protein Properties Length: 320aa    MW: 35905.5 Da    PI: 5.5712
Description WRKY family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58682574PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-34827PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1WRKY96.81.5e-3068126259
                --SS-EEEEEEE--TT-SS-EEEEEE-ST.T---EEEEEE-SSSTTEEEEEEES--SS- CS
       WRKY   2 dDgynWrKYGqKevkgsefprsYYrCtsa.gCpvkkkversaedpkvveitYegeHnhe 59 
                +D ++WrKYGqK++kgs++pr+YYrC+s+ gCp++k+vers++dp++v +tY  eHnh+
  Lsa009015  68 SDSWAWRKYGQKPIKGSPYPRGYYRCSSSkGCPARKQVERSRTDPTMVMVTYACEHNHP 126
                69*************************998****************************7 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.20.25.804.9E-3261128IPR003657WRKY domain
SuperFamilySSF1182901.83E-2664128IPR003657WRKY domain
SMARTSM007741.6E-3567127IPR003657WRKY domain
PROSITE profilePS5081132.35168128IPR003657WRKY domain
PfamPF031061.1E-2569126IPR003657WRKY domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 320 aa     Download sequence    Send to blast
MEDHEEHDNS PENSGESPTS DMFNDMKTTS TSSTLKRSRR SIQKRVVSVP LRDIEGSRLK  60
SETNAPPSDS WAWRKYGQKP IKGSPYPRGY YRCSSSKGCP ARKQVERSRT DPTMVMVTYA  120
CEHNHPWPAS RNNNHHHHHY NSAASPPPAA STTTTTTTEE TVSNSDDQEE DPPLITKQSI  180
SEPDEKFTST LDQVVTGGPF VTSSDQFGWC YDLESTTSTM LESPLMAGDI VGDADMAMIF  240
SIREEDESLF ADLGELPECT TVFRRREIIN EEEHHHRRPC NLAPWCGXKR VTTQADILVM  300
NLSLLWAGIC KTPRSCVQCA
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5w3x_B1e-2044128679Disease resistance protein RRS1
5w3x_D1e-2044128679Disease resistance protein RRS1
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023737152.10.0probable WRKY transcription factor 65 isoform X1
TrEMBLA0A2J6MC670.0A0A2J6MC67_LACSA; Uncharacterized protein
STRINGXP_009758490.11e-100(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G58710.13e-55WRKY DNA-binding protein 69