PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009029
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 332aa    MW: 37330.4 Da    PI: 7.2934
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-40387PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP104.12.3e-32501722124
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgtssssaseceaesssssasnsssg............. 88 
                 g+kdrhsk++T +g+RdRRvRls+++a++++dLqd+LG+ ++sk ++WLl +ak++i+el+ ++ ++ s+ ++ +   sa ++s++             
  Lsa009029  50 FGGKDRHSKVCTVRGLRDRRVRLSVPTAIQLYDLQDRLGLNQPSKVVDWLLDAAKHEIDELPPLQIPPGSFGQNLQAMLSACSQSEEvksnvnglnwedy 149
                689*************************************************************888874444344433333333332222223334444 PP

        TCP  89 .....kaaksaakskksqksaasalnlakesrakararare 124
                     +                   + a++++++     re
  Lsa009029 150 wnpdkS------------------KATARDTSEDGENLDRE 172
                322210..................11111222222222222 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.7E-3052166IPR005333Transcription factor, TCP
PROSITE profilePS5136931.55452110IPR017887Transcription factor TCP subgroup
Sequence ? help Back to Top
Protein Sequence    Length: 332 aa     Download sequence    Send to blast
MNISNLRESN HETKQEGSSD ACKIVPKPNL TTSSWSRLKD PRIVRVSRAF GGKDRHSKVC  60
TVRGLRDRRV RLSVPTAIQL YDLQDRLGLN QPSKVVDWLL DAAKHEIDEL PPLQIPPGSF  120
GQNLQAMLSA CSQSEEVKSN VNGLNWEDYW NPDKSKATAR DTSEDGENLD REDERNKHDH  180
HGTFVQPSNF FGRNPNSSNL PGLLNNVVPN SSFLKWDPSN LSLSQFHHQH GDTVHNFNMN  240
VSALPSIPSG SQVLLYPPPQ PPPQTQSYFP SHNHNSGEFD PKQLNFQMLS SSSSSNFTPP  300
LYTINQGMRP FHLSMNPKFF SSEDHGGHEP HK
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A8e-1957111155Putative transcription factor PCF6
5zkt_B8e-1957111155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756208.10.0transcription factor TCP13-like isoform X1
RefseqXP_023756209.10.0transcription factor TCP13-like isoform X1
TrEMBLA0A2J6LV190.0A0A2J6LV19_LACSA; Uncharacterized protein
STRINGEOY036993e-95(Theobroma cacao)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G02150.11e-48plastid transcription factor 1