PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009096
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family STAT
Protein Properties Length: 705aa    MW: 79079.2 Da    PI: 6.0301
Description STAT family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58694322PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-3111PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1STAT193.81.8e-602203411122
       STAT   1 ldvvllnalgqpvekdvevvasLlyadsglvveksddaeapLLisydGvefssedrplkllrGrasfklkisqLsskcdnrLfrikfeipklkkypflea 100
                ldvvl++a+g+ v+k++evva+L yad+ ++vek+ddaeapLL+sydG+ef+s drp+ l++GrasfklkisqLsskcdn+Lf+ikf+ipk+ +ypf+e+
  Lsa009096 220 LDVVLMDAFGHLVNKEMEVVATLTYADNYAHVEKPDDAEAPLLTSYDGIEFASWDRPSTLINGRASFKLKISQLSSKCDNKLFCIKFNIPKMGRYPFFEV 319
                8*************************************************************************************************** PP

       STAT 101 vskpirCisrsrntrsssltkk 122
                +s++irCisr+r+tr+s+l++k
  Lsa009096 320 FSRSIRCISRNRTTRPSTLIWK 341
                *****************99986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:2.60.120.2003.5E-623157IPR013320Concanavalin A-like lectin/glucanase domain
PfamPF133854.5E-829163No hitNo description
SuperFamilySSF498991.58E-730159IPR013320Concanavalin A-like lectin/glucanase domain
Gene3DG3DSA:3.30.505.102.1E-5594685IPR000980SH2 domain
SuperFamilySSF555501.05E-7594661IPR000980SH2 domain
PROSITE profilePS500018.907602705IPR000980SH2 domain
Sequence ? help Back to Top
Protein Sequence    Length: 705 aa     Download sequence    Send to blast
MGSNVVEDGG YSSLKDLKLE IITNESDLDA TFSLCFWLYL PADSSPFPST LLRQHHSDTT  60
SSTPFLSLNA NKEIVLYPIL SVPKDTSIPE DVAMETEIPT ARTKIDVPLN KWIHIGCEVS  120
SDTLRLYIHG EIVGENHVAY TSDSSKKVSL LGANKDDSIE GYLYGVEMLP ITSPIKDHFV  180
KDPPMQIRVD SSSATDIEED NDGVWTVVGG KASCRRNFSL DVVLMDAFGH LVNKEMEVVA  240
TLTYADNYAH VEKPDDAEAP LLTSYDGIEF ASWDRPSTLI NGRASFKLKI SQLSSKCDNK  300
LFCIKFNIPK MGRYPFFEVF SRSIRCISRN RTTRPSTLIW KRSTTLMHSV NGTFGPDGGS  360
IEPVNNVVHE AKPSPPSKRI KLELANPFVH LKPDDSFKQG YEEHHEVDRS NGRILEGREE  420
IYNSSSDTDS NTNSNSNSSE ATNSCKSNGN PVSDLTVFKY CLGTLTEKSL LLKDLATSAS  480
QQDVMDFAMR VSQFSGCLHH RNQIRSSKKM IEEGTKVWNS VLQNHHHVSW DNMIPVLRDQ  540
FIKISSCRNR FLVHQDFEVL RRIGGCQDSV TQENFEKLWC WLYPVAFALS QNGLNEMWDS  600
RWIEGLVTKE EAESSLQGPT GGIVDPGTFV LRFPTSRSWP HPDAGNLIVT YVGADFAIHH  660
RLLSLDFFHS SCGNETLGKS LKDMLLEERE LSRLGRITTR SVRLV
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1374382PPSKRIKLE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023756002.10.0SH2 domain-containing protein A isoform X1
TrEMBLA0A251TMU50.0A0A251TMU5_HELAN; Putative SH2 domain protein A
STRINGXP_010274602.10.0(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G78540.10.0SH2 domain protein B