PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009142
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family NF-YB
Protein Properties Length: 155aa    MW: 17170.3 Da    PI: 4.7564
Description NF-YB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58674854PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1NF-YB38.72.4e-1217114596
      NF-YB   5 drflPianvsrimkkvlPa......nakiskdaketvqecvsefisfvtseasdkcqrekrktingddllwalatlGfedyveplkvylkkyrelege 96 
                 ++lP a v r++k  l +      + ++ kd+     e    fi ++++ a+d c++ kr+ti+++d++ al ++ f +++++l++ l+++++ +++
  Lsa009142  17 AEELPKAIVKRLVKDKLSQlsqdggEIQVLKDSLLAFSESSRIFIHYLSATANDICKESKRQTISAEDVFKALEEIEFPEFIASLRTSLEEFKQKNAK 114
                568999********988752221113356788888999999**************************************************9987665 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.20.105.2E-3115146IPR009072Histone-fold
PfamPF008083.8E-91989IPR003958Transcription factor CBF/NF-Y/archaeal histone domain
SuperFamilySSF471132.48E-2520148IPR009072Histone-fold
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046982Molecular Functionprotein heterodimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 155 aa     Download sequence    Send to blast
MATATTATVV EKVVADAEEL PKAIVKRLVK DKLSQLSQDG GEIQVLKDSL LAFSESSRIF  60
IHYLSATAND ICKESKRQTI SAEDVFKALE EIEFPEFIAS LRTSLEEFKQ KNAKRKSDTS  120
KSKEAKKTKT EESPMENGKA EETEAEDVNV VVNGE
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5y26_A4e-112013418132DNA polymerase epsilon subunit D
5y27_A4e-112013418132DNA polymerase epsilon subunit D
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023768952.11e-107DNA polymerase epsilon subunit 3-like
TrEMBLA0A2J6L2J01e-105A0A2J6L2J0_LACSA; Uncharacterized protein
STRINGXP_010245113.11e-52(Nelumbo nucifera)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT2G27470.12e-34nuclear factor Y, subunit B11