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PlantRegMap/PlantTFDB v5.0
Plant Transcription
Factor Database
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| Home TFext BLAST Prediction Download Help About Links PlantRegMap |
Transcription Factor Information
| Basic Information? help Back to Top | |||||||||
|---|---|---|---|---|---|---|---|---|---|
| TF ID | Lsa009179 | ||||||||
| Organism | |||||||||
| Taxonomic ID | |||||||||
| Taxonomic Lineage |
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
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| Family | B3 | ||||||||
| Protein Properties | Length: 163aa MW: 18712.1 Da PI: 3.783 | ||||||||
| Description | B3 family protein | ||||||||
| Gene Model |
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| Signature Domain? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| No. | Domain | Score | E-value | Start | End | HMM Start | HMM End |
| 1 | B3 | 48.6 | 1.5e-15 | 9 | 99 | 1 | 98 |
EEEE-..-HHHHTT-EE--HHH.HTT..---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEEEE- CS
B3 1 ffkvltpsdvlksgrlvlpkkfaeeh..ggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvkvfr 98
ffk+l d ++ + l lp f+ +h ++++e++ + l g +W++k+ +k ++ y++++GW++ v++ +L gDf+vF l ++s+f ++++f+
Lsa009179 9 FFKIL--LDRSAPH-LELPPGFVHKHleKKIPENP--ILLSRNGGYEWRLKI--KKEGEIYYFADGWSDVVEDSDLGFGDFLVFWLLDESTF--KLSIFS 99
78888..8888888.99*********876666665..88889999*******..999999*************************9998998..666665 PP
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| Protein Features ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Database | Entry ID | E-value | Start | End | InterPro ID | Description |
| SuperFamily | SSF101936 | 5.89E-21 | 5 | 108 | IPR015300 | DNA-binding pseudobarrel domain |
| PROSITE profile | PS50863 | 12.985 | 6 | 101 | IPR003340 | B3 DNA binding domain |
| Gene3D | G3DSA:2.40.330.10 | 4.4E-17 | 7 | 112 | IPR015300 | DNA-binding pseudobarrel domain |
| CDD | cd10017 | 1.43E-16 | 7 | 99 | No hit | No description |
| SMART | SM01019 | 2.7E-16 | 9 | 101 | IPR003340 | B3 DNA binding domain |
| Pfam | PF02362 | 7.2E-13 | 9 | 98 | IPR003340 | B3 DNA binding domain |
| Gene Ontology ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| GO Term | GO Category | GO Description | ||||
| GO:0003677 | Molecular Function | DNA binding | ||||
| Sequence ? help Back to Top |
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| Protein Sequence Length: 163 aa Download sequence Send to blast |
MAPRGLPSFF KILLDRSAPH LELPPGFVHK HLEKKIPENP ILLSRNGGYE WRLKIKKEGE 60 IYYFADGWSD VVEDSDLGFG DFLVFWLLDE STFKLSIFSP NGCEKNFPLK IQDEHDDTEE 120 EEEEEEKEED NYDDDGGNGV EYEEDDDDDG GDIDGDDGDE DDE |
| Annotation -- Protein ? help Back to Top | |||||||
|---|---|---|---|---|---|---|---|
| Source | Hit ID | E-value | Description | ||||
| Refseq | XP_023746764.1 | 1e-110 | putative B3 domain-containing protein At5g66980 isoform X2 | ||||
| TrEMBL | A0A2J6JME6 | 1e-107 | A0A2J6JME6_LACSA; Uncharacterized protein | ||||
| Best hit in Arabidopsis thaliana ? help Back to Top | ||||||
|---|---|---|---|---|---|---|
| Hit ID | E-value | Description | ||||
| AT4G01580.1 | 8e-13 | B3 family protein | ||||
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for Bioinformatics, Peking University Last Modified: 2022-12-08 Questions or Comments, please contact  |
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