PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009206
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family C2H2
Protein Properties Length: 163aa    MW: 18475.6 Da    PI: 8.3115
Description C2H2 family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678763PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-25238PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1zf-C2H211.90.000672042123
               EEETTTTEEESSHHHHHHHHHHT CS
    zf-C2H2  1 ykCpdCgksFsrksnLkrHirtH 23
               ++C+ C++ F ++  L  H++ H
  Lsa009206 20 FPCQFCSRKFYSSQALGGHQNAH 42
               89******************988 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
SuperFamilySSF576673.44E-61847No hitNo description
PROSITE profilePS5015711.2612047IPR007087Zinc finger, C2H2
PROSITE patternPS0002802242IPR007087Zinc finger, C2H2
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046872Molecular Functionmetal ion binding
Sequence ? help Back to Top
Protein Sequence    Length: 163 aa     Download sequence    Send to blast
MEGGNVESNN GELKSTIKSF PCQFCSRKFY SSQALGGHQN AHKKERTAAR KAKRAANVQC  60
NYSASLLPQP PLLFAPSNQI GILNPSLYIT AHAANICQFQ SQQFGSDNLM YYRANYINQN  120
PYYQFDQEDE HQQSFLNSPE KMFVMNESNK DKDGQKLDLS LHL
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753186.11e-119zinc finger protein 5-like
TrEMBLA0A103Y7987e-73A0A103Y798_CYNCS; Zinc finger, C2H2
STRINGXP_009779959.12e-37(Nicotiana sylvestris)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT5G14010.12e-08C2H2 family protein