PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009210
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MYB
Protein Properties Length: 254aa    MW: 29045.3 Da    PI: 7.1502
Description MYB family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58678463PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-51874PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Myb_DNA-binding38.42.9e-122262848
                     HHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding  8 EdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48
                     Ed++l  +++++G  +W++ ++  g+ R++k+c++rw +yl
        Lsa009210 22 EDQKLRAYIEKYGHSNWRKLPKLAGLSRCGKSCRLRWVNYL 62
                     9**************************************97 PP
2Myb_DNA-binding56.94.8e-1868113148
                      TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS
  Myb_DNA-binding   1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 
                      rg+ T eE++l++ +++ lG++ W++Ia++++ gR+++++k++w+++l
        Lsa009210  68 RGNYTDEEEDLIISLHHSLGNK-WSKIAAKLP-GRSDNDVKNHWHTHL 113
                      899*******************.*********.************986 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS500908.5021062IPR017877Myb-like domain
SMARTSM007174.1E-61464IPR001005SANT/Myb domain
SuperFamilySSF466891.45E-2621109IPR009057Homeodomain-like
Gene3DG3DSA:1.10.10.608.7E-212169IPR009057Homeodomain-like
PfamPF002498.7E-112262IPR001005SANT/Myb domain
CDDcd001679.93E-82262No hitNo description
PROSITE profilePS5129426.29663117IPR017930Myb domain
SMARTSM007171.3E-1667115IPR001005SANT/Myb domain
PfamPF002491.1E-1668113IPR001005SANT/Myb domain
CDDcd001671.31E-1170113No hitNo description
Gene3DG3DSA:1.10.10.607.0E-2570117IPR009057Homeodomain-like
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 254 aa     Download sequence    Send to blast
MVRAPYFDKN GLKKKEHGAD NEDQKLRAYI EKYGHSNWRK LPKLAGLSRC GKSCRLRWVN  60
YLHPNINRGN YTDEEEDLII SLHHSLGNKW SKIAAKLPGR SDNDVKNHWH THLRKRVNQK  120
PTVSYSGKEM VQNPKCSKEK GVLKVSDLKD RDEVELLLSV LSAESSSDAN KEQSSPSSSN  180
SLDHVASNGY SSQPLIEEPV EHFWRMGGDF FMEAMDLMNH YDQLRSYDDS STSGDHDSIM  240
TDDCLWSANG FLWS
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
1a5j_A1e-232211814109B-MYB
1h8a_C2e-232211734128MYB TRANSFORMING PROTEIN
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtActs as negative regulator of cold tolerance. Negatively regulates beta-amylase genes at the transcriptional level in response to cold stress. Suppresses beta-amylase gene expression by interacting with TIFY11A/JAZ9. Maltose produced by beta-amylases has a role in protecting cell membranes under cold stress conditions in rice and may contribute to the cold tolerance as a compatible solute. {ECO:0000269|PubMed:28062835}.
Regulation -- Description ? help Back to Top
Source Description
UniProtINDUCTION: Induced by cold stress and flooding. {ECO:0000269|PubMed:28062835}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023753792.11e-176transcription factor MYB30-like
SwissprotQ6K1S67e-51MYB30_ORYSJ; Transcription factor MYB30
TrEMBLA0A2J6M0I61e-175A0A2J6M0I6_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT3G23250.11e-50myb domain protein 15
Publications ? help Back to Top
  1. Kikuchi S, et al.
    Collection, mapping, and annotation of over 28,000 cDNA clones from japonica rice.
    Science, 2003. 301(5631): p. 376-9
    [PMID:12869764]
  2. Yilmaz A, et al.
    GRASSIUS: a platform for comparative regulatory genomics across the grasses.
    Plant Physiol., 2009. 149(1): p. 171-80
    [PMID:18987217]
  3. Lv Y, et al.
    The OsMYB30 Transcription Factor Suppresses Cold Tolerance by Interacting with a JAZ Protein and Suppressing β-Amylase Expression.
    Plant Physiol., 2017. 173(2): p. 1475-1491
    [PMID:28062835]