PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009233
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family bHLH
Protein Properties Length: 217aa    MW: 24263 Da    PI: 4.7225
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58689371PU_refUnigeneView CDS
PUT-187a-Lactuca_sativa-5145PU_unrefplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH20.21.1e-061672031354
                HHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHH CS
        HLH  13 RdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksL 54 
                R+++++  + Lr ++P++     k++s +++L +Av+Y+k L
  Lsa009233 167 RREMKKMVDSLRGIVPNS-----KRMSTVDVLDEAVKYLKTL 203
                6789*************9.....89***************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088811.249154203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000831.40E-7162208No hitNo description
SMARTSM003532.6E-5163209IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
SuperFamilySSF474592.62E-8165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
PfamPF000101.6E-4165203IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.101.7E-6165210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 217 aa     Download sequence    Send to blast
MQSDQHHLLP FPNPPPFTSF FGQNVDFGQN VDFQPSKICP RNFIIFDRTD NRSQIMYHPS  60
VPVPAPGYIH VTRNDENASR EVESIMKEDS ADIDILMSFE DEEDEGEEGY EEEEEVSTAR  120
THGNDEIDTA DSCSSRLPGK GSGRGRGSGL GLSMASCKSS GVSDRKRREM KKMVDSLRGI  180
VPNSKRMSTV DVLDEAVKYL KTLKVELQNV SVVNMKN
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
1163168DRKRRE
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023746920.11e-161transcription factor bHLH144-like
TrEMBLA0A2J6JM271e-112A0A2J6JM27_LACSA; Uncharacterized protein
STRINGXP_002519719.19e-44(Ricinus communis)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G29950.22e-21bHLH family protein