PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009262
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family SRS
Protein Properties Length: 346aa    MW: 36845.1 Da    PI: 7.3255
Description SRS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58677626PU_unrefUnigeneView CDS
PUT-187a-Lactuca_sativa-2284PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1DUF7022151.7e-661272802154
     DUF702   2 rsgtasCqdCGnqakkdCaheRCRtCCksrgfdCathvkstWvpaakrrerqqqlaaasskaaasaaeaaskrkrelkskkqsalss..tklssaeskke 99 
                +sg++sCqdCGnqakkdC h+RCRtCCksrgf+C+thvkstWvpaakrrerqq  + + +++++++ ++++kr+r+++ +++ ++ +  t     +s++ 
  Lsa009262 127 GSGGVSCQDCGNQAKKDCPHMRCRTCCKSRGFHCQTHVKSTWVPAAKRRERQQYSSGT-QDQSRRRVHQNTKRTRSTQDHENPNMLNpiTGAIAYNSSSG 225
                57899**********************************************8877665.55555666677777777755555555441145556778889 PP

     DUF702 100 letsslPeevsseavfrcvrvssvddgeeelaYqtavsigGhvfkGiLydqGlee 154
                le+ ++P+ev ++a frcvrvss+d+ ++++aYq+av+igGh+fkGiLydqG+e 
  Lsa009262 226 LEVGNFPSEVTTQANFRCVRVSSIDETDDQFAYQAAVNIGGHLFKGILYDQGPEG 280
                9999************************************************985 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF051427.0E-63130279IPR007818Protein of unknown function DUF702
TIGRFAMsTIGR016237.4E-28132174IPR006510Zinc finger, lateral root primordium type 1
TIGRFAMsTIGR016249.2E-25231278IPR006511Lateral Root Primordium type 1, C-terminal
Sequence ? help Back to Top
Protein Sequence    Length: 346 aa     Download sequence    Send to blast
MAGFFSLGSA TYHSQQDPIS TSNLPSNPTP NSNPTESSSW FLYGSTRSTH DRPSTTTTTT  60
TTKDFELWQQ PTQADVSHNL LAGAASMGGG GGGGDGRLIN FSDESTWGSA AFVMMGHGVI  120
GGGSSGGSGG VSCQDCGNQA KKDCPHMRCR TCCKSRGFHC QTHVKSTWVP AAKRRERQQY  180
SSGTQDQSRR RVHQNTKRTR STQDHENPNM LNPITGAIAY NSSSGLEVGN FPSEVTTQAN  240
FRCVRVSSID ETDDQFAYQA AVNIGGHLFK GILYDQGPEG QQYMGGDTSS GGSAGGIPQL  300
NLTTTTTTSP GNSTAAANYI GHSLYPSLGG NDYMSSTQFF HQISRD
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023750824.10.0protein SHI RELATED SEQUENCE 1-like
TrEMBLA0A2J6M7420.0A0A2J6M742_LACSA; Uncharacterized protein
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G75520.17e-58SHI-related sequence 5