PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009354
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family MIKC_MADS
Protein Properties Length: 226aa    MW: 26279.9 Da    PI: 9.9107
Description MIKC_MADS family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58681589PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1SRF-TF80.11.5e-251059251
               ---SHHHHHHHHHHHHHHHHHHHHHHHHHHT-EEEEEEE-TTSEEEEEE- CS
     SRF-TF  2 rienksnrqvtfskRrngilKKAeELSvLCdaevaviifsstgklyeyss 51
               ri+n+  rqvtfskR  g+lKKA+EL +LCdaev ++ifs+tg+l+eyss
  Lsa009354 10 RIDNSASRQVTFSKRSRGLLKKAKELAILCDAEVGLVIFSNTGRLHEYSS 59
               8***********************************************96 PP
2K-box80.92.9e-27821701098
      K-box  10 eeakaeslqqelakLkkeienLqreqRhllGedLesLslkeLqqLeqqLekslkkiRskKnellleqieelqkkekelqeenkaLrkkl 98 
                 + + e +q e+a+L+++++ Lq+++R+l Ge ++ Ls+keLq+Le+qLe+slk++R kK+++++e+i+el +ke+ + +enk+L++k+
  Lsa009354  82 PTMEVEFWQGEAARLRQQLQCLQHSNRQLSGERISGLSVKELQNLENQLETSLKSVRMKKEQIFTEEIKELHRKENLMVQENKELHNKV 170
                556789********************************************************************************998 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5006630.698161IPR002100Transcription factor, MADS-box
SMARTSM004325.6E-36160IPR002100Transcription factor, MADS-box
CDDcd002652.60E-39277No hitNo description
SuperFamilySSF554551.44E-30289IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-27323IPR002100Transcription factor, MADS-box
PfamPF003199.2E-231057IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-272338IPR002100Transcription factor, MADS-box
PRINTSPR004047.0E-273859IPR002100Transcription factor, MADS-box
PfamPF014862.3E-2685170IPR002487Transcription factor, K-box
PROSITE profilePS5129715.62486178IPR002487Transcription factor, K-box
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003677Molecular FunctionDNA binding
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 226 aa     Download sequence    Send to blast
MGRGKIQIRR IDNSASRQVT FSKRSRGLLK KAKELAILCD AEVGLVIFSN TGRLHEYSSS  60
SMTKITERYN KAKDEHHHML NPTMEVEFWQ GEAARLRQQL QCLQHSNRQL SGERISGLSV  120
KELQNLENQL ETSLKSVRMK KEQIFTEEIK ELHRKENLMV QENKELHNKV NLENQEKAEL  180
QKKIYGLWST NEVNKHYNTS FSLSIDNNLN ATQKDDITAE AMKLRL
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5f28_A3e-21181181MEF2C
5f28_B3e-21181181MEF2C
5f28_C3e-21181181MEF2C
5f28_D3e-21181181MEF2C
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtProbable transcription factor.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023763019.11e-131MADS-box transcription factor 27-like
SwissprotQ6EP493e-84MAD27_ORYSJ; MADS-box transcription factor 27
TrEMBLA0A2U1Q3S41e-106A0A2U1Q3S4_ARTAN; MADS-box transcription factor 23
STRINGXP_010112258.14e-90(Morus notabilis)
Publications ? help Back to Top
  1. Puig J, et al.
    Analysis of the expression of the AGL17-like clade of MADS-box transcription factors in rice.
    Gene Expr. Patterns, 2013 Jun-Jul. 13(5-6): p. 160-70
    [PMID:23466806]
  2. Yu C, et al.
    The effects of fluctuations in the nutrient supply on the expression of five members of the AGL17 clade of MADS-box genes in rice.
    PLoS ONE, 2014. 9(8): p. e105597
    [PMID:25140876]