PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009361

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 379aa MW: 41227.9 Da PI: 8.9828

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
PUT-187a-Lactuca_sativa-40574	PU_ref	plantGDB	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	61.9	1.3e-19	16	61	1	47
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 +g+W++eEdell ++v+++G ++W++I + ++ gR++k+c++rw + Lsa009361 16 KGPWSPEEDELLQQLVEKHGARNWSLIGKSIP-GRSGKSCRLRWCNQ 61 79****************************.*********985 PP
2	Myb_DNA-binding	54.6	2.4e-17	70	112	3	47
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHH CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqky 47 ++T+eEde +++a++++G++ W+tIar + gRt++ +k++w++ Lsa009361 70 AFTPEEDETILRAHARFGNK-WATIARLLS-GRTDNAIKNHWNST 112 79****************.*****.*********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	28.142	11	66	IPR017930	Myb domain
SuperFamily	SSF46689	8.27E-32	13	109	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-17	15	64	IPR001005	SANT/Myb domain
Pfam	PF00249	4.2E-19	16	61	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.4E-26	17	69	IPR009057	Homeodomain-like
CDD	cd00167	1.52E-16	18	60	No hit	No description
SMART	SM00717	1.8E-14	67	115	IPR001005	SANT/Myb domain
PROSITE profile	PS51294	20.97	68	117	IPR017930	Myb domain
CDD	cd00167	1.10E-11	70	113	No hit	No description
Gene3D	G3DSA:1.10.10.60	4.9E-23	70	116	IPR009057	Homeodomain-like
Pfam	PF00249	1.4E-14	70	112	IPR001005	SANT/Myb domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 379 aa Download sequence Send to blast
MFMGCNTPKK DMDRIKGPWS PEEDELLQQL VEKHGARNWS LIGKSIPGRS GKSCRLRWCN 60 QLSPQVEHRA FTPEEDETIL RAHARFGNKW ATIARLLSGR TDNAIKNHWN STLKRKCSSM 120 TNEEFSEFAI QQPSLKRSVS AGSAVAVSGR YLNPGSPSGS DVSDSSVPAI SSSHVYRPVA 180 RTGAVVAPQI EVATSSPPPP PPPLQTKDPP TLLSLSLPGV ENEESTAAPT PMQLMPPSPV 240 ASPLPPPPPP PPVPIHAMPL RQVPVDRYKN INLNNADLMS SIPMAISSAM HQLKVSQNPV 300 TEVDQQDKGF TPFNAEFLSV MQEMIRTEVR NYMTGVEQNN HHQRSGEGGG MCMKQAANGG 360 GDGFRNAAVV KRIGISKID

Sequence ? help Back to Top

Protein Sequence Length: 379 aa Download sequence Send to blast

MFMGCNTPKK DMDRIKGPWS PEEDELLQQL VEKHGARNWS LIGKSIPGRS GKSCRLRWCN  60
QLSPQVEHRA FTPEEDETIL RAHARFGNKW ATIARLLSGR TDNAIKNHWN STLKRKCSSM  120
TNEEFSEFAI QQPSLKRSVS AGSAVAVSGR YLNPGSPSGS DVSDSSVPAI SSSHVYRPVA  180
RTGAVVAPQI EVATSSPPPP PPPLQTKDPP TLLSLSLPGV ENEESTAAPT PMQLMPPSPV  240
ASPLPPPPPP PPVPIHAMPL RQVPVDRYKN INLNNADLMS SIPMAISSAM HQLKVSQNPV  300
TEVDQQDKGF TPFNAEFLSV MQEMIRTEVR NYMTGVEQNN HHQRSGEGGG MCMKQAANGG  360
GDGFRNAAVV KRIGISKID

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	3e-39	13	119	4	110	B-MYB
1mse_C	3e-39	15	116	3	104	C-Myb DNA-Binding Domain
1msf_C	3e-39	15	116	3	104	C-Myb DNA-Binding Domain
Search in ModeBase

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023732430.1	0.0	transcription factor MYB44-like
TrEMBL	A0A2J6KIJ6	0.0	A0A2J6KIJ6_LACSA; Uncharacterized protein
STRING	VIT_07s0129g01050.t01	1e-129	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G37260.1	2e-71	myb domain protein 73