PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009527
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HB-other
Protein Properties Length: 110aa    MW: 12002.6 Da    PI: 10.106
Description HB-other family protein
Gene Model
Gene Model ID Type Source Coding Sequence
gnl|UG|Lsa#S58673913PU_refUnigeneView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1Homeobox61.21.6e-192378257
               T--SS--HHHHHHHHHHHHHSSS--HHHHHHHHHHCTS-HHHHHHHHHHHHHHHHC CS
   Homeobox  2 rkRttftkeqleeLeelFeknrypsaeereeLAkklgLterqVkvWFqNrRakekk 57
                kR+  t+ ql +Le+ ++ ++yps+++r++L++ lgLt+rq ++WF+ rR k+kk
  Lsa009527 23 PKRQMKTPFQLGTLEKTYALEMYPSEATRAKLSETLGLTDRQLQMWFCHRRLKDKK 78
               69****************************************************98 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.601.7E-19479IPR009057Homeodomain-like
SuperFamilySSF466892.48E-181079IPR009057Homeodomain-like
PROSITE profilePS5007116.3091979IPR001356Homeobox domain
SMARTSM003891.3E-172183IPR001356Homeobox domain
PfamPF000464.0E-172378IPR001356Homeobox domain
CDDcd000861.96E-142479No hitNo description
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0003677Molecular FunctionDNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 110 aa     Download sequence    Send to blast
METGSEGESN RNINGQSDGS KKPKRQMKTP FQLGTLEKTY ALEMYPSEAT RAKLSETLGL  60
TDRQLQMWFC HRRLKDKKEG TVKRAGGDGG ESLKPSKQEL VVVVSGGGGG
Nucleic Localization Signal ? help Back to Top
NLS
No. Start End Sequence
17178RRLKDKKE
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator required for the maintenance of the plant vegetative phase. In association with CHR11 or CHR17 may prevent the early activation of the vegetative-to-reproductive transition by regulating key genes that contribute to flower timing, such as FT, SEP1, SEP3, AGL8/FUL, SOC1 and FLC. {ECO:0000269|PubMed:22694359}.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023736728.19e-68homeobox-DDT domain protein RLT1
SwissprotF4HY561e-29RLT1_ARATH; Homeobox-DDT domain protein RLT1
TrEMBLA0A2J6K8Y92e-66A0A2J6K8Y9_LACSA; Uncharacterized protein
STRINGMigut.M01107.1.p2e-35(Erythranthe guttata)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G28420.12e-31homeobox-1