PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009574

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

MYB

Protein Properties

Length: 237aa MW: 27475.6 Da PI: 5.1054

Description

MYB family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58674783	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	Myb_DNA-binding	42.8	1.2e-13	11	58	1	48
TSSS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 1 rgrWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 rg+W eEd++l v+ lG ++W++ a+ g++R++k+c++rw +yl Lsa009574 11 RGPWVDEEDDRLTITVEALGEKHWDALAKQSGLRRSGKSCRLRWMNYL 58 89********************************************97 PP
2	Myb_DNA-binding	54.7	2.3e-17	66	109	3	48
SS-HHHHHHHHHHHHHTTTT-HHHHHHHHTTTS-HHHHHHHHHHHT CS Myb_DNA-binding 3 rWTteEdellvdavkqlGggtWktIartmgkgRtlkqcksrwqkyl 48 T eE+ +++d++kq+G++ W++Ia++++ gRt++++k++w+++l Lsa009574 66 EITDEEEHIILDLHKQWGNK-WSRIAKRLP-GRTDNEIKNYWRSHL 109 669***************.*****.**********986 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS51294	14.883	6	58	IPR017930	Myb domain
SuperFamily	SSF46689	1.36E-26	8	105	IPR009057	Homeodomain-like
SMART	SM00717	1.7E-9	10	60	IPR001005	SANT/Myb domain
Pfam	PF00249	2.5E-11	11	58	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	2.6E-20	12	65	IPR009057	Homeodomain-like
CDD	cd00167	6.11E-6	13	58	No hit	No description
PROSITE profile	PS51294	26.35	59	113	IPR017930	Myb domain
SMART	SM00717	7.1E-15	63	111	IPR001005	SANT/Myb domain
Pfam	PF00249	3.8E-15	65	109	IPR001005	SANT/Myb domain
Gene3D	G3DSA:1.10.10.60	7.3E-25	66	112	IPR009057	Homeodomain-like
CDD	cd00167	1.90E-10	68	109	No hit	No description

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 237 aa Download sequence Send to blast
MSIHDPRNLR RGPWVDEEDD RLTITVEALG EKHWDALAKQ SGLRRSGKSC RLRWMNYLRP 60 NLKHGEITDE EEHIILDLHK QWGNKWSRIA KRLPGRTDNE IKNYWRSHLK KKAEAQLEYF 120 AGIKEDVKQD FLTTKCDRSF DHVGESSMND KEDIFGISSM ETPESCNMDI AFESGSPYES 180 RMSDLISSCC WEGDQEVKHH EDCMGTFPCF CSEVGSSSEE STTHGVWDLW SPIWETG

3D Structure ? help Back to Top

PDB ID	Evalue	Query Start	Query End	Hit Start	Hit End	Description
1a5j_A	5e-26	8	115	4	110	B-MYB
1gv2_A	4e-26	9	113	2	105	MYB PROTO-ONCOGENE PROTEIN
1h88_C	2e-25	9	113	56	159	MYB PROTO-ONCOGENE PROTEIN
1h89_C	2e-25	9	113	56	159	MYB PROTO-ONCOGENE PROTEIN
1mse_C	4e-26	9	113	2	105	C-Myb DNA-Binding Domain
1msf_C	4e-26	9	113	2	105	C-Myb DNA-Binding Domain
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Regulation -- Description ? help Back to Top
Source	Description
UniProt	INDUCTION: Accumulates in etiolated seedlings in dark conditions. {ECO:0000269\|PubMed:9839469}.

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023745997.1	1e-177	transcription factor MYB27-like
Swissprot	Q9SCP1	4e-55	MYB27_ARATH; Transcription factor MYB27
STRING	XP_008442723.1	2e-59	(Cucumis melo)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G53200.1	3e-57	myb domain protein 27

Publications ? help Back to Top
Albert NW, et al. A conserved network of transcriptional activators and repressors regulates anthocyanin pigmentation in eudicots. Plant Cell, 2014. 26(3): p. 962-80 [PMID:24642943]