PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009635

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

Protein Properties

Length: 198aa MW: 22938.1 Da PI: 10.1028

Description

B3 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S29958458	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	B3	41.9	1.8e-13	1	72	18	95
--HHH.HTT---..--SEEEEEETTS-EEEEEE..EEETTEEEE-TTHHHHHHHHT--TT-EEEEEE-SSSEE..EEE CS B3 18 lpkkfaeehggkkeesktltledesgrsWevkliyrkksgryvltkGWkeFvkangLkegDfvvFkldgrsefelvvk 95 +pkkf+e+hg++ ++l+ ++g +W+v l +k++++++l++GW eF++ Lk g ++Fk+++ s f v Lsa009635 1 MPKKFTEKHGKD--LLERVILKVPNGDVWRVDL--QKSGDEIWLKNGWWEFAEHYSLKYGHLLMFKYERFSIF--GVV 72 59*****977..6668***********..*****************************9764555..454 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
SuperFamily	SSF101936	1.96E-16	1	81	IPR015300	DNA-binding pseudobarrel domain
PROSITE profile	PS50863	14.071	1	77	IPR003340	B3 DNA binding domain
Pfam	PF02362	1.6E-10	1	69	IPR003340	B3 DNA binding domain
CDD	cd10017	1.99E-12	1	75	No hit	No description
SMART	SM01019	0.0029	2	77	IPR003340	B3 DNA binding domain
Gene3D	G3DSA:2.40.330.10	9.3E-18	2	77	IPR015300	DNA-binding pseudobarrel domain

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0003677	Molecular Function	DNA binding

Sequence ? help Back to Top
Protein Sequence Length: 198 aa Download sequence Send to blast
MPKKFTEKHG KDLLERVILK VPNGDVWRVD LQKSGDEIWL KNGWWEFAEH YSLKYGHLLM 60 FKYERFSIFG VVIFDTSATE IVSPPMKKDP LGNSTKEVAR NNPQEVKLTK LETVKSEEET 120 CSSSEDEKSR IKINVGGGSL RKRREDGRRA VERAKANFKS HKHFFIAYIQ QSYVTGSRGL 180 LSSGRYLLRW CWLGGIYX

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023729078.1	1e-123	putative B3 domain-containing protein Os03g0621600
TrEMBL	A0A2J6KRF2	1e-122	A0A2J6KRF2_LACSA; Uncharacterized protein

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT3G18990.1	4e-20	B3 family protein