PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009755
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family HSF
Protein Properties Length: 363aa    MW: 40510.6 Da    PI: 7.8254
Description HSF family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-24979PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HSF_DNA-bind1154.7e-36271192103
                   HHHHHHHHHCTGGGTTTSEESSSSSEEEES-HHHHHHHTHHHHSTT--HHHHHHHHHHTTEEE---SSBTTTTXTTSEEEEESXXXXXXXXXXXXXX CS
  HSF_DNA-bind   2 FlkklyeiledeelkeliswsengnsfvvldeeefakkvLpkyFkhsnfaSFvRQLnmYgFkkvkdeekkskskekiweFkhksFkkgkkellekik 98 
                   Fl+k+y++++d+++++++sw e+ ++fvv+ + efa+++Lp+yFkh+nf+SFvRQLn+YgF+k+  ++         weF+++ Fkkg+k+ll++i+
     Lsa009755  27 FLTKTYQLVDDPTTDHIVSWGEDDTTFVVWRPPEFARDLLPNYFKHNNFSSFVRQLNTYGFRKIVPDR---------WEFANEFFKKGEKHLLCEIH 114
                   9*****************************************************************99.........******************** PP

                   XXXXX CS
  HSF_DNA-bind  99 rkkse 103
                   r+k++
     Lsa009755 115 RRKTS 119
                   **987 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
Gene3DG3DSA:1.10.10.104.0E-3819111IPR011991Winged helix-turn-helix DNA-binding domain
SMARTSM004151.6E-6023116IPR000232Heat shock factor (HSF)-type, DNA-binding
SuperFamilySSF467851.8E-3424116IPR011991Winged helix-turn-helix DNA-binding domain
PRINTSPR000568.4E-202750IPR000232Heat shock factor (HSF)-type, DNA-binding
PfamPF004477.8E-3227116IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-206577IPR000232Heat shock factor (HSF)-type, DNA-binding
PROSITE patternPS0043406690IPR000232Heat shock factor (HSF)-type, DNA-binding
PRINTSPR000568.4E-207890IPR000232Heat shock factor (HSF)-type, DNA-binding
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0006355Biological Processregulation of transcription, DNA-templated
GO:0005634Cellular Componentnucleus
GO:0003700Molecular Functiontranscription factor activity, sequence-specific DNA binding
GO:0043565Molecular Functionsequence-specific DNA binding
Sequence ? help Back to Top
Protein Sequence    Length: 363 aa     Download sequence    Send to blast
MAMMLDNSCD GGMLLSLDSH KAVPAPFLTK TYQLVDDPTT DHIVSWGEDD TTFVVWRPPE  60
FARDLLPNYF KHNNFSSFVR QLNTYGFRKI VPDRWEFANE FFKKGEKHLL CEIHRRKTSQ  120
PQVTLNHHHH PHHFTGLGGG GGLQGGNGFF AYPTSTRSIS PPDSDEHLYC DNSPPLSSPT  180
TTATTTTAGM LGIFHNGNHS ISSGRGGNSV TALSEDNERL RRSNNMLMSE LAHMRKLYND  240
IIYFVQNHVK PVAPSNSYPS SLLVSSNHSN MNGQLLMQKQ QQQASFMNVG NKSQPLHAST  300
VNNVVVDDSV NVSRTKLFGV PLLSKKRLHP EYGSNNTMVE THKPRLVLEN DDLGLNLMPP  360
SPC
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5d5u_B3e-221111810131Heat shock factor protein 1
5d5v_B3e-221111810131Heat shock factor protein 1
5d5v_D3e-221111810131Heat shock factor protein 1
Search in ModeBase
Functional Description ? help Back to Top
Source Description
UniProtTranscriptional regulator that specifically binds DNA sequence 5'-AGAAnnTTCT-3' known as heat shock promoter elements (HSE).
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023728472.10.0heat stress transcription factor B-4-like
SwissprotQ9C6351e-116HSFB4_ARATH; Heat stress transcription factor B-4
TrEMBLA0A2J6KS720.0A0A2J6KS72_LACSA; Uncharacterized protein
STRINGcassava4.1_010465m1e-152(Manihot esculenta)
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT1G46264.11e-102heat shock transcription factor B4