PlantTFDB
PlantRegMap/PlantTFDB v5.0
Plant Transcription Factor Database
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(e.g., LFY)
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Lsa009777
Organism
Lactuca sativa
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca
Family TCP
Protein Properties Length: 462aa    MW: 49841.2 Da    PI: 9.6458
Description TCP family protein
Gene Model
Gene Model ID Type Source Coding Sequence
PUT-187a-Lactuca_sativa-17839PU_refplantGDBView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1TCP127.61.3e-39892472134
        TCP   2 agkkdrhskihTkvggRdRRvRlsaecaarfFdLqdeLGfdkdsktieWLlqqakpaikeltgt.......................ssssasec....e 74 
                 g+kdrhsk+ T++g+RdRRvRls+++a++f+dLqd+LG+d++sk++eWLl++a ++i+el+++                       ++s+   +     
  Lsa009777  89 SGGKDRHSKVLTSKGLRDRRVRLSVSTAIQFYDLQDRLGYDQPSKAVEWLLKAASTSIDELPSLdpsfsgaishthhhhqnedkkstGNSPD--FedpnY 186
                689*************************************************************9999988888888877766653322222..233322 PP

        TCP  75 aesssssasnsssg....kaaksaakskksqksaasalnlak.esrakarararertrekmrikn 134
                ++++s++++    +    ++aks a+s+ s++s+ s l+l++ e r kar+rare  ++k r k+
  Lsa009777 187 QQQNSNNNN----NnnnvSKAKSPACSSTSETSKGSGLSLSRsENRVKARERAREMASKKEREKE 247
                222222222....133568999999*****************9************8888777664 PP
Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PfamPF036341.1E-4190245IPR005333Transcription factor, TCP
PROSITE profilePS5136931.76391149IPR017887Transcription factor TCP subgroup
PROSITE profilePS513708.756225246IPR017888CYC/TB1, R domain
Sequence ? help Back to Top
Protein Sequence    Length: 462 aa     Download sequence    Send to blast
MEVDEIQRQV RKFQRVSSNG STTTTDNSSN PQKIATHKGN LELQKFDDGG GGGGGGGGID  60
VVVGGGGGGG VARLCGWPSS RIVRVSRASG GKDRHSKVLT SKGLRDRRVR LSVSTAIQFY  120
DLQDRLGYDQ PSKAVEWLLK AASTSIDELP SLDPSFSGAI SHTHHHHQNE DKKSTGNSPD  180
FEDPNYQQQN SNNNNNNNNV SKAKSPACSS TSETSKGSGL SLSRSENRVK ARERAREMAS  240
KKEREKETDS TRAAVLNQVN SISENSSFTD LLTGGIHSNT NVRRHSPESR THWATPMDYF  300
FARPTQPSTQ LIQIPQFNIT AGDNHQHQHH NNNNNNPQHH FSFLQDSFVP AVTTGGGGGG  360
GESYNLNFSM TSSSGGTLAP GFSRGTLQSN LPSSLLPHHH HFQRFQSPSI DGSTSTNLPF  420
FIVPNAASDH FPAAAGYHLS YGGGGGDGVG RHSDHHKEKT KN
3D Structure ? help Back to Top
Structure
PDB ID Evalue Query Start Query End Hit Start Hit End Description
5zkt_A9e-2596150155Putative transcription factor PCF6
5zkt_B9e-2596150155Putative transcription factor PCF6
Search in ModeBase
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_023766192.10.0transcription factor TCP2-like
TrEMBLA0A2J6L8H70.0A0A2J6L8H7_LACSA; Uncharacterized protein
STRINGPOPTR_0011s02350.13e-87(Populus trichocarpa)