PlantTFDB - Plant Transcription Factor Database @ CBI, PKU

PlantRegMap/PlantTFDB v5.0

Plant Transcription Factor Database

Transcription Factor Information

Basic Information | Signature Domain | Sequence |

Basic Information? help Back to Top

TF ID

Lsa009785

Organism

Lactuca sativa

Taxonomic ID

4236

Taxonomic Lineage

cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; asterids; campanulids; Asterales; Asteraceae; Cichorioideae; Cichorieae; Lactucinae; Lactuca

Family

C2H2

Protein Properties

Length: 685aa MW: 76534.4 Da PI: 8.6272

Description

C2H2 family protein

Gene Model

Gene Model ID	Type	Source	Coding Sequence
gnl\|UG\|Lsa#S58694852	PU_ref	Unigene	View CDS

Signature Domain? help Back to Top

No.	Domain	Score	E-value	Start	End	HMM Start	HMM End
1	zf-C2H2	15.6	4.6e-05	129	150	2	23
EETTTTEEESSHHHHHHHHHHT CS zf-C2H2 2 kCpdCgksFsrksnLkrHirtH 23 kC++C + F ++ n++rHir+H Lsa009785 129 KCEKCAREFCSPVNYRRHIRVH 150 7*******************99 PP

Protein Features ? help Back to Top

Database	Entry ID	E-value	Start	End	InterPro ID	Description
PROSITE profile	PS50157	9.536	128	150	IPR007087	Zinc finger, C2H2
PROSITE pattern	PS00028	0	130	150	IPR007087	Zinc finger, C2H2

Gene Ontology ? help Back to Top
GO Term	GO Category	GO Description
GO:0046872	Molecular Function	metal ion binding

Sequence ? help Back to Top
Protein Sequence Length: 685 aa Download sequence Send to blast
XSFSVSPTAS LIPRQLRTHQ FHRFSQSYRR LSGDLLHLSD LRRSLNSFGL TLMPVAKLLG 60 TSSADAMKAE EGSDSLDTFI KQAVGKEPSF SFSRTGDSPV QWIQLLHALD QQDLPGWPLL 120 APMKIQMQKC EKCAREFCSP VNYRRHIRVH RRSLKFHKES QKYRDLLGAF WDKLSFDEAK 180 EIMSFKDVNL EEVPGSSIIR NIIANLRKPI FLSLPQIYVK AGSMLVDIIQ GRPSTSRLPV 240 SSQELFSILN DASETTFLSA GTAESLQKFV FDGEAGKIGL EIKNLIAATS FLFEQKLVKA 300 WLADKDAEAL RCQKLLVEEE EAAQRRQAEI LERKKQRKLR QKEQRAKDQS NEVKPDLFET 360 TTPSTETSSS PTCAEVDSFS PDDDDDDDDV IVQFSNNVEE EEEEEEDLNV VDPTEHQKVH 420 GNDLHQMVAR WQVPKSQKGG RNGFYGSKRE QTHNKHREQR ANVVNTSKIW TKKPKPENGG 480 VEVVKSRVQN DATSQSQSQS QSNCSQLMIG SISVTVRSPG QGQENGNTEV KKNNVQAGRE 540 RSTVKIWRPR HESRGVSGDS KVKGENGQSQ TPPTCQSNDD SDGGNEPEAK LFSLDAAKAF 600 LAQRWKEAIS GEHSKLILSL SSSREEPPGE NSESSSNNNM NNNNTSINNT NNVKVKVKGK 660 FVMKGEKGGG GVKTKYIPKQ KGGVN

Sequence ? help Back to Top

Protein Sequence Length: 685 aa Download sequence Send to blast

XSFSVSPTAS LIPRQLRTHQ FHRFSQSYRR LSGDLLHLSD LRRSLNSFGL TLMPVAKLLG  60
TSSADAMKAE EGSDSLDTFI KQAVGKEPSF SFSRTGDSPV QWIQLLHALD QQDLPGWPLL  120
APMKIQMQKC EKCAREFCSP VNYRRHIRVH RRSLKFHKES QKYRDLLGAF WDKLSFDEAK  180
EIMSFKDVNL EEVPGSSIIR NIIANLRKPI FLSLPQIYVK AGSMLVDIIQ GRPSTSRLPV  240
SSQELFSILN DASETTFLSA GTAESLQKFV FDGEAGKIGL EIKNLIAATS FLFEQKLVKA  300
WLADKDAEAL RCQKLLVEEE EAAQRRQAEI LERKKQRKLR QKEQRAKDQS NEVKPDLFET  360
TTPSTETSSS PTCAEVDSFS PDDDDDDDDV IVQFSNNVEE EEEEEEDLNV VDPTEHQKVH  420
GNDLHQMVAR WQVPKSQKGG RNGFYGSKRE QTHNKHREQR ANVVNTSKIW TKKPKPENGG  480
VEVVKSRVQN DATSQSQSQS QSNCSQLMIG SISVTVRSPG QGQENGNTEV KKNNVQAGRE  540
RSTVKIWRPR HESRGVSGDS KVKGENGQSQ TPPTCQSNDD SDGGNEPEAK LFSLDAAKAF  600
LAQRWKEAIS GEHSKLILSL SSSREEPPGE NSESSSNNNM NNNNTSINNT NNVKVKVKGK  660
FVMKGEKGGG GVKTKYIPKQ KGGVN

Nucleic Localization Signal ? help Back to Top

No.	Start	End	Sequence
1	331	338	ERKKQRKL

Annotation -- Protein ? help Back to Top
Source	Hit ID	E-value	Description
Refseq	XP_023769477.1	0.0	uncharacterized protein LOC111918049
TrEMBL	A0A2J6L1F9	0.0	A0A2J6L1F9_LACSA; Uncharacterized protein
STRING	VIT_16s0050g00700.t01	0.0	(Vitis vinifera)

Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID	E-value	Description
AT4G25610.1	1e-120	C2H2-like zinc finger protein